Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-44]:
1mvfd_PU0_1-44
CI=1.62


[45-84]:
1mvfd_PU0_45-84
CI=2.91


[85-126 ]:
1mvfd_PU0_85-126
CI=2.91


Level 1
PU
Molecule needs Java 1.4 Structure


[1-26]:
1mvfd_PU1_1-26
CI=2.34


[27-44]:
1mvfd_PU1_27-44
CI=0.00


[45-84]:
1mvfd_PU1_45-84
CI=2.91


[85-126 ]:
1mvfd_PU1_85-126
CI=2.91


Level 2
PU
Molecule needs Java 1.4 Structure


[1-26]:
1mvfd_PU2_1-26
CI=2.34


[27-44]:
1mvfd_PU2_27-44
CI=0.00


[45-66]:
1mvfd_PU2_45-66
CI=1.70


[67-84]:
1mvfd_PU2_67-84
CI=2.60


[85-126 ]:
1mvfd_PU2_85-126
CI=2.91


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-26]:
1mvfd_PU_1-26
CI=2.34


[27-44]:
1mvfd_PU_27-44
CI=0.00


[45-66]:
1mvfd_PU_45-66
CI=1.70


[67-84]:
1mvfd_PU_67-84
CI=2.60


[85-101]:
1mvfd_PU_85-101
CI=0.00


[102-126 ]:
1mvfd_PU_102-126
CI=0.53