Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-197]:
1mwma_PU0_1-197
CI=4.12


[198-251]:
1mwma_PU0_198-251
CI=1.94


[252-316 ]:
1mwma_PU0_252-316
CI=1.83


Level 1
PU
Molecule needs Java 1.4 Structure


[1-144]:
1mwma_PU1_1-144
CI=3.82


[145-197]:
1mwma_PU1_145-197
CI=4.19


[198-251]:
1mwma_PU1_198-251
CI=1.94


[252-316 ]:
1mwma_PU1_252-316
CI=1.83


Level 2
PU
Molecule needs Java 1.4 Structure


[1-30]:
1mwma_PU2_1-30
CI=3.29


[31-63]:
1mwma_PU2_31-63
CI=3.07


[64-144]:
1mwma_PU2_64-144
CI=2.26


[145-197]:
1mwma_PU2_145-197
CI=4.19


[198-251]:
1mwma_PU2_198-251
CI=1.94


[252-316 ]:
1mwma_PU2_252-316
CI=1.83


Level 3
PU
Molecule needs Java 1.4 Structure


[1-30]:
1mwma_PU3_1-30
CI=3.29


[31-63]:
1mwma_PU3_31-63
CI=3.07


[64-144]:
1mwma_PU3_64-144
CI=2.26


[145-197]:
1mwma_PU3_145-197
CI=4.19


[198-251]:
1mwma_PU3_198-251
CI=1.94


[252-268]:
1mwma_PU3_252-268
CI=0.00


[269-316 ]:
1mwma_PU3_269-316
CI=2.03


Level 4
PU
Molecule needs Java 1.4 Structure


[1-30]:
1mwma_PU4_1-30
CI=3.29


[31-63]:
1mwma_PU4_31-63
CI=3.07


[64-88]:
1mwma_PU4_64-88
CI=0.08


[89-144]:
1mwma_PU4_89-144
CI=2.48


[145-197]:
1mwma_PU4_145-197
CI=4.19


[198-251]:
1mwma_PU4_198-251
CI=1.94


[252-268]:
1mwma_PU4_252-268
CI=0.00


[269-316 ]:
1mwma_PU4_269-316
CI=2.03


Level 5
PU
Molecule needs Java 1.4 Structure


[1-30]:
1mwma_PU5_1-30
CI=3.29


[31-63]:
1mwma_PU5_31-63
CI=3.07


[64-88]:
1mwma_PU5_64-88
CI=0.08


[89-144]:
1mwma_PU5_89-144
CI=2.48


[145-197]:
1mwma_PU5_145-197
CI=4.19


[198-251]:
1mwma_PU5_198-251
CI=1.94


[252-268]:
1mwma_PU5_252-268
CI=0.00


[269-300]:
1mwma_PU5_269-300
CI=1.59


[301-316 ]:
1mwma_PU5_301-316
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-30]:
1mwma_PU6_1-30
CI=3.29


[31-63]:
1mwma_PU6_31-63
CI=3.07


[64-88]:
1mwma_PU6_64-88
CI=0.08


[89-144]:
1mwma_PU6_89-144
CI=2.48


[145-197]:
1mwma_PU6_145-197
CI=4.19


[198-223]:
1mwma_PU6_198-223
CI=1.22


[224-251]:
1mwma_PU6_224-251
CI=0.61


[252-268]:
1mwma_PU6_252-268
CI=0.00


[269-300]:
1mwma_PU6_269-300
CI=1.59


[301-316 ]:
1mwma_PU6_301-316
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-30]:
1mwma_PU7_1-30
CI=3.29


[31-63]:
1mwma_PU7_31-63
CI=3.07


[64-88]:
1mwma_PU7_64-88
CI=0.08


[89-115]:
1mwma_PU7_89-115
CI=0.77


[116-144]:
1mwma_PU7_116-144
CI=0.70


[145-197]:
1mwma_PU7_145-197
CI=4.19


[198-223]:
1mwma_PU7_198-223
CI=1.22


[224-251]:
1mwma_PU7_224-251
CI=0.61


[252-268]:
1mwma_PU7_252-268
CI=0.00


[269-300]:
1mwma_PU7_269-300
CI=1.59


[301-316 ]:
1mwma_PU7_301-316
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-30]:
1mwma_PU_1-30
CI=3.29


[31-63]:
1mwma_PU_31-63
CI=3.07


[64-88]:
1mwma_PU_64-88
CI=0.08


[89-115]:
1mwma_PU_89-115
CI=0.77


[116-144]:
1mwma_PU_116-144
CI=0.70


[145-167]:
1mwma_PU_145-167
CI=0.56


[168-197]:
1mwma_PU_168-197
CI=3.18


[198-223]:
1mwma_PU_198-223
CI=1.22


[224-251]:
1mwma_PU_224-251
CI=0.61


[252-268]:
1mwma_PU_252-268
CI=0.00


[269-300]:
1mwma_PU_269-300
CI=1.59


[301-316 ]:
1mwma_PU_301-316
CI=0.00