Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-24]:
1mzga_PU0_1-24
CI=0.23


[25-132]:
1mzga_PU0_25-132
CI=3.09


[133-140 ]:
1mzga_PU0_133-140
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1mzga_PU1_1-24
CI=0.23


[25-88]:
1mzga_PU1_25-88
CI=3.12


[89-132]:
1mzga_PU1_89-132
CI=0.87


[133-140 ]:
1mzga_PU1_133-140
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-24]:
1mzga_PU2_1-24
CI=0.23


[25-88]:
1mzga_PU2_25-88
CI=3.12


[89-105]:
1mzga_PU2_89-105
CI=0.00


[106-132]:
1mzga_PU2_106-132
CI=0.14


[133-140 ]:
1mzga_PU2_133-140
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-24]:
1mzga_PU_1-24
CI=0.23


[25-40]:
1mzga_PU_25-40
CI=0.00


[41-65]:
1mzga_PU_41-65
CI=1.65


[66-88]:
1mzga_PU_66-88
CI=0.89


[89-105]:
1mzga_PU_89-105
CI=0.00


[106-132]:
1mzga_PU_106-132
CI=0.14


[133-140 ]:
1mzga_PU_133-140
CI=0.00