Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-82]:
1n2aa_PU0_1-82
CI=3.41


[83-187]:
1n2aa_PU0_83-187
CI=1.74


[188-201 ]:
1n2aa_PU0_188-201
CI=0.25


Level 1
PU
Molecule needs Java 1.4 Structure


[1-82]:
1n2aa_PU1_1-82
CI=3.41


[83-102]:
1n2aa_PU1_83-102
CI=0.47


[103-132]:
1n2aa_PU1_103-132
CI=0.87


[133-187]:
1n2aa_PU1_133-187
CI=1.22


[188-201 ]:
1n2aa_PU1_188-201
CI=0.25


Level 2
PU
Molecule needs Java 1.4 Structure


[1-31]:
1n2aa_PU2_1-31
CI=2.01


[32-51]:
1n2aa_PU2_32-51
CI=1.13


[52-82]:
1n2aa_PU2_52-82
CI=1.71


[83-102]:
1n2aa_PU2_83-102
CI=0.47


[103-132]:
1n2aa_PU2_103-132
CI=0.87


[133-187]:
1n2aa_PU2_133-187
CI=1.22


[188-201 ]:
1n2aa_PU2_188-201
CI=0.25


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-31]:
1n2aa_PU_1-31
CI=2.01


[32-51]:
1n2aa_PU_32-51
CI=1.13


[52-82]:
1n2aa_PU_52-82
CI=1.71


[83-102]:
1n2aa_PU_83-102
CI=0.47


[103-132]:
1n2aa_PU_103-132
CI=0.87


[133-155]:
1n2aa_PU_133-155
CI=0.81


[156-187]:
1n2aa_PU_156-187
CI=0.29


[188-201 ]:
1n2aa_PU_188-201
CI=0.25