Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-141]:
1n67a_PU0_1-141
CI=4.79


[142-332 ]:
1n67a_PU0_142-332
CI=5.53


Level 1
PU
Molecule needs Java 1.4 Structure


[1-141]:
1n67a_PU1_1-141
CI=4.79


[142-210]:
1n67a_PU1_142-210
CI=1.93


[211-228]:
1n67a_PU1_211-228
CI=0.82


[229-332 ]:
1n67a_PU1_229-332
CI=2.55


Level 2
PU
Molecule needs Java 1.4 Structure


[1-141]:
1n67a_PU2_1-141
CI=4.79


[142-210]:
1n67a_PU2_142-210
CI=1.93


[211-228]:
1n67a_PU2_211-228
CI=0.82


[229-266]:
1n67a_PU2_229-266
CI=1.25


[267-332 ]:
1n67a_PU2_267-332
CI=3.19


Level 3
PU
Molecule needs Java 1.4 Structure


[1-141]:
1n67a_PU3_1-141
CI=4.79


[142-185]:
1n67a_PU3_142-185
CI=2.88


[186-210]:
1n67a_PU3_186-210
CI=0.22


[211-228]:
1n67a_PU3_211-228
CI=0.82


[229-266]:
1n67a_PU3_229-266
CI=1.25


[267-332 ]:
1n67a_PU3_267-332
CI=3.19


Level 4
PU
Molecule needs Java 1.4 Structure


[1-141]:
1n67a_PU4_1-141
CI=4.79


[142-185]:
1n67a_PU4_142-185
CI=2.88


[186-210]:
1n67a_PU4_186-210
CI=0.22


[211-228]:
1n67a_PU4_211-228
CI=0.82


[229-248]:
1n67a_PU4_229-248
CI=1.69


[249-266]:
1n67a_PU4_249-266
CI=0.10


[267-332 ]:
1n67a_PU4_267-332
CI=3.19


Level 5
PU
Molecule needs Java 1.4 Structure


[1-36]:
1n67a_PU5_1-36
CI=1.97


[37-103]:
1n67a_PU5_37-103
CI=3.22


[104-141]:
1n67a_PU5_104-141
CI=1.77


[142-185]:
1n67a_PU5_142-185
CI=2.88


[186-210]:
1n67a_PU5_186-210
CI=0.22


[211-228]:
1n67a_PU5_211-228
CI=0.82


[229-248]:
1n67a_PU5_229-248
CI=1.69


[249-266]:
1n67a_PU5_249-266
CI=0.10


[267-332 ]:
1n67a_PU5_267-332
CI=3.19


Level 6
PU
Molecule needs Java 1.4 Structure


[1-36]:
1n67a_PU6_1-36
CI=1.97


[37-52]:
1n67a_PU6_37-52
CI=0.00


[53-70]:
1n67a_PU6_53-70
CI=0.61


[71-103]:
1n67a_PU6_71-103
CI=1.79


[104-141]:
1n67a_PU6_104-141
CI=1.77


[142-185]:
1n67a_PU6_142-185
CI=2.88


[186-210]:
1n67a_PU6_186-210
CI=0.22


[211-228]:
1n67a_PU6_211-228
CI=0.82


[229-248]:
1n67a_PU6_229-248
CI=1.69


[249-266]:
1n67a_PU6_249-266
CI=0.10


[267-332 ]:
1n67a_PU6_267-332
CI=3.19


Level 7
PU
Molecule needs Java 1.4 Structure


[1-36]:
1n67a_PU7_1-36
CI=1.97


[37-52]:
1n67a_PU7_37-52
CI=0.00


[53-70]:
1n67a_PU7_53-70
CI=0.61


[71-103]:
1n67a_PU7_71-103
CI=1.79


[104-141]:
1n67a_PU7_104-141
CI=1.77


[142-185]:
1n67a_PU7_142-185
CI=2.88


[186-210]:
1n67a_PU7_186-210
CI=0.22


[211-228]:
1n67a_PU7_211-228
CI=0.82


[229-248]:
1n67a_PU7_229-248
CI=1.69


[249-266]:
1n67a_PU7_249-266
CI=0.10


[267-316]:
1n67a_PU7_267-316
CI=3.12


[317-332 ]:
1n67a_PU7_317-332
CI=0.93


Level 8
PU
Molecule needs Java 1.4 Structure


[1-36]:
1n67a_PU8_1-36
CI=1.97


[37-52]:
1n67a_PU8_37-52
CI=0.00


[53-70]:
1n67a_PU8_53-70
CI=0.61


[71-103]:
1n67a_PU8_71-103
CI=1.79


[104-141]:
1n67a_PU8_104-141
CI=1.77


[142-185]:
1n67a_PU8_142-185
CI=2.88


[186-210]:
1n67a_PU8_186-210
CI=0.22


[211-228]:
1n67a_PU8_211-228
CI=0.82


[229-248]:
1n67a_PU8_229-248
CI=1.69


[249-266]:
1n67a_PU8_249-266
CI=0.10


[267-298]:
1n67a_PU8_267-298
CI=2.26


[299-316]:
1n67a_PU8_299-316
CI=0.81


[317-332 ]:
1n67a_PU8_317-332
CI=0.93


Level 9
PU
Molecule needs Java 1.4 Structure


[1-17]:
1n67a_PU9_1-17
CI=0.00


[18-36]:
1n67a_PU9_18-36
CI=0.40


[37-52]:
1n67a_PU9_37-52
CI=0.00


[53-70]:
1n67a_PU9_53-70
CI=0.61


[71-103]:
1n67a_PU9_71-103
CI=1.79


[104-141]:
1n67a_PU9_104-141
CI=1.77


[142-185]:
1n67a_PU9_142-185
CI=2.88


[186-210]:
1n67a_PU9_186-210
CI=0.22


[211-228]:
1n67a_PU9_211-228
CI=0.82


[229-248]:
1n67a_PU9_229-248
CI=1.69


[249-266]:
1n67a_PU9_249-266
CI=0.10


[267-298]:
1n67a_PU9_267-298
CI=2.26


[299-316]:
1n67a_PU9_299-316
CI=0.81


[317-332 ]:
1n67a_PU9_317-332
CI=0.93


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-17]:
1n67a_PU_1-17
CI=0.00


[18-36]:
1n67a_PU_18-36
CI=0.40


[37-52]:
1n67a_PU_37-52
CI=0.00


[53-70]:
1n67a_PU_53-70
CI=0.61


[71-103]:
1n67a_PU_71-103
CI=1.79


[104-141]:
1n67a_PU_104-141
CI=1.77


[142-159]:
1n67a_PU_142-159
CI=1.04


[160-185]:
1n67a_PU_160-185
CI=0.28


[186-210]:
1n67a_PU_186-210
CI=0.22


[211-228]:
1n67a_PU_211-228
CI=0.82


[229-248]:
1n67a_PU_229-248
CI=1.69


[249-266]:
1n67a_PU_249-266
CI=0.10


[267-298]:
1n67a_PU_267-298
CI=2.26


[299-316]:
1n67a_PU_299-316
CI=0.81


[317-332 ]:
1n67a_PU_317-332
CI=0.93