Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-64]:
1n8va_PU0_1-64
CI=1.22


[65-101 ]:
1n8va_PU0_65-101
CI=1.22


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1n8va_PU1_1-16
CI=0.00


[17-43]:
1n8va_PU1_17-43
CI=1.24


[44-64]:
1n8va_PU1_44-64
CI=0.43


[65-101 ]:
1n8va_PU1_65-101
CI=1.22


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-16]:
1n8va_PU_1-16
CI=0.00


[17-43]:
1n8va_PU_17-43
CI=1.24


[44-64]:
1n8va_PU_44-64
CI=0.43


[65-82]:
1n8va_PU_65-82
CI=0.51


[83-101 ]:
1n8va_PU_83-101
CI=0.49