Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-43]:
1n9la_PU0_1-43
CI=2.63


[44-109 ]:
1n9la_PU0_44-109
CI=3.61


Level 1
PU
Molecule needs Java 1.4 Structure


[1-43]:
1n9la_PU1_1-43
CI=2.63


[44-81]:
1n9la_PU1_44-81
CI=2.00


[82-109 ]:
1n9la_PU1_82-109
CI=3.06


Level 2
PU
Molecule needs Java 1.4 Structure


[1-21]:
1n9la_PU2_1-21
CI=2.07


[22-43]:
1n9la_PU2_22-43
CI=0.26


[44-81]:
1n9la_PU2_44-81
CI=2.00


[82-109 ]:
1n9la_PU2_82-109
CI=3.06


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-21]:
1n9la_PU_1-21
CI=2.07


[22-43]:
1n9la_PU_22-43
CI=0.26


[44-65]:
1n9la_PU_44-65
CI=0.08


[66-81]:
1n9la_PU_66-81
CI=0.81


[82-109 ]:
1n9la_PU_82-109
CI=3.06