Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-30]:
1nc7a_PU0_1-30
CI=0.95


[31-62]:
1nc7a_PU0_31-62
CI=2.92


[63-110 ]:
1nc7a_PU0_63-110
CI=1.08


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-30]:
1nc7a_PU_1-30
CI=0.95


[31-62]:
1nc7a_PU_31-62
CI=2.92


[63-80]:
1nc7a_PU_63-80
CI=0.10


[81-110 ]:
1nc7a_PU_81-110
CI=1.59