Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-91]:
1ng6a_PU0_1-91
CI=1.70


[92-148 ]:
1ng6a_PU0_92-148
CI=1.70


Level 1
PU
Molecule needs Java 1.4 Structure


[1-53]:
1ng6a_PU1_1-53
CI=1.18


[54-91]:
1ng6a_PU1_54-91
CI=1.28


[92-148 ]:
1ng6a_PU1_92-148
CI=1.70


Level 2
PU
Molecule needs Java 1.4 Structure


[1-30]:
1ng6a_PU2_1-30
CI=1.01


[31-53]:
1ng6a_PU2_31-53
CI=0.97


[54-91]:
1ng6a_PU2_54-91
CI=1.28


[92-148 ]:
1ng6a_PU2_92-148
CI=1.70


Level 3
PU
Molecule needs Java 1.4 Structure


[1-30]:
1ng6a_PU3_1-30
CI=1.01


[31-53]:
1ng6a_PU3_31-53
CI=0.97


[54-91]:
1ng6a_PU3_54-91
CI=1.28


[92-107]:
1ng6a_PU3_92-107
CI=0.00


[108-125]:
1ng6a_PU3_108-125
CI=0.71


[126-148 ]:
1ng6a_PU3_126-148
CI=0.08


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-30]:
1ng6a_PU_1-30
CI=1.01


[31-53]:
1ng6a_PU_31-53
CI=0.97


[54-74]:
1ng6a_PU_54-74
CI=0.09


[75-91]:
1ng6a_PU_75-91
CI=0.00


[92-107]:
1ng6a_PU_92-107
CI=0.00


[108-125]:
1ng6a_PU_108-125
CI=0.71


[126-148 ]:
1ng6a_PU_126-148
CI=0.08