Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-320]:
1ni4a_PU0_1-320
CI=4.31


[321-350 ]:
1ni4a_PU0_321-350
CI=3.23


Level 1
PU
Molecule needs Java 1.4 Structure


[1-132]:
1ni4a_PU1_1-132
CI=3.23


[133-249]:
1ni4a_PU1_133-249
CI=3.78


[250-320]:
1ni4a_PU1_250-320
CI=0.27


[321-350 ]:
1ni4a_PU1_321-350
CI=3.23


Level 2
PU
Molecule needs Java 1.4 Structure


[1-34]:
1ni4a_PU2_1-34
CI=2.02


[35-132]:
1ni4a_PU2_35-132
CI=3.62


[133-249]:
1ni4a_PU2_133-249
CI=3.78


[250-320]:
1ni4a_PU2_250-320
CI=0.27


[321-350 ]:
1ni4a_PU2_321-350
CI=3.23


Level 3
PU
Molecule needs Java 1.4 Structure


[1-34]:
1ni4a_PU3_1-34
CI=2.02


[35-132]:
1ni4a_PU3_35-132
CI=3.62


[133-249]:
1ni4a_PU3_133-249
CI=3.78


[250-280]:
1ni4a_PU3_250-280
CI=0.36


[281-320]:
1ni4a_PU3_281-320
CI=0.19


[321-350 ]:
1ni4a_PU3_321-350
CI=3.23


Level 4
PU
Molecule needs Java 1.4 Structure


[1-34]:
1ni4a_PU4_1-34
CI=2.02


[35-132]:
1ni4a_PU4_35-132
CI=3.62


[133-249]:
1ni4a_PU4_133-249
CI=3.78


[250-280]:
1ni4a_PU4_250-280
CI=0.36


[281-297]:
1ni4a_PU4_281-297
CI=0.43


[298-320]:
1ni4a_PU4_298-320
CI=0.00


[321-350 ]:
1ni4a_PU4_321-350
CI=3.23


Level 5
PU
Molecule needs Java 1.4 Structure


[1-34]:
1ni4a_PU5_1-34
CI=2.02


[35-76]:
1ni4a_PU5_35-76
CI=1.17


[77-132]:
1ni4a_PU5_77-132
CI=3.73


[133-249]:
1ni4a_PU5_133-249
CI=3.78


[250-280]:
1ni4a_PU5_250-280
CI=0.36


[281-297]:
1ni4a_PU5_281-297
CI=0.43


[298-320]:
1ni4a_PU5_298-320
CI=0.00


[321-350 ]:
1ni4a_PU5_321-350
CI=3.23


Level 6
PU
Molecule needs Java 1.4 Structure


[1-34]:
1ni4a_PU6_1-34
CI=2.02


[35-76]:
1ni4a_PU6_35-76
CI=1.17


[77-132]:
1ni4a_PU6_77-132
CI=3.73


[133-206]:
1ni4a_PU6_133-206
CI=2.69


[207-249]:
1ni4a_PU6_207-249
CI=2.44


[250-280]:
1ni4a_PU6_250-280
CI=0.36


[281-297]:
1ni4a_PU6_281-297
CI=0.43


[298-320]:
1ni4a_PU6_298-320
CI=0.00


[321-350 ]:
1ni4a_PU6_321-350
CI=3.23


Level 7
PU
Molecule needs Java 1.4 Structure


[1-34]:
1ni4a_PU7_1-34
CI=2.02


[35-76]:
1ni4a_PU7_35-76
CI=1.17


[77-132]:
1ni4a_PU7_77-132
CI=3.73


[133-187]:
1ni4a_PU7_133-187
CI=2.51


[188-206]:
1ni4a_PU7_188-206
CI=0.30


[207-249]:
1ni4a_PU7_207-249
CI=2.44


[250-280]:
1ni4a_PU7_250-280
CI=0.36


[281-297]:
1ni4a_PU7_281-297
CI=0.43


[298-320]:
1ni4a_PU7_298-320
CI=0.00


[321-350 ]:
1ni4a_PU7_321-350
CI=3.23


Level 8
PU
Molecule needs Java 1.4 Structure


[1-34]:
1ni4a_PU8_1-34
CI=2.02


[35-60]:
1ni4a_PU8_35-60
CI=0.43


[61-76]:
1ni4a_PU8_61-76
CI=0.00


[77-132]:
1ni4a_PU8_77-132
CI=3.73


[133-187]:
1ni4a_PU8_133-187
CI=2.51


[188-206]:
1ni4a_PU8_188-206
CI=0.30


[207-249]:
1ni4a_PU8_207-249
CI=2.44


[250-280]:
1ni4a_PU8_250-280
CI=0.36


[281-297]:
1ni4a_PU8_281-297
CI=0.43


[298-320]:
1ni4a_PU8_298-320
CI=0.00


[321-350 ]:
1ni4a_PU8_321-350
CI=3.23


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-34]:
1ni4a_PU_1-34
CI=2.02


[35-60]:
1ni4a_PU_35-60
CI=0.43


[61-76]:
1ni4a_PU_61-76
CI=0.00


[77-97]:
1ni4a_PU_77-97
CI=0.51


[98-132]:
1ni4a_PU_98-132
CI=2.66


[133-187]:
1ni4a_PU_133-187
CI=2.51


[188-206]:
1ni4a_PU_188-206
CI=0.30


[207-249]:
1ni4a_PU_207-249
CI=2.44


[250-280]:
1ni4a_PU_250-280
CI=0.36


[281-297]:
1ni4a_PU_281-297
CI=0.43


[298-320]:
1ni4a_PU_298-320
CI=0.00


[321-350 ]:
1ni4a_PU_321-350
CI=3.23