Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-104]:
1ni9a_PU0_1-104
CI=4.45


[105-242]:
1ni9a_PU0_105-242
CI=4.45


[243-291 ]:
1ni9a_PU0_243-291
CI=4.05


Level 1
PU
Molecule needs Java 1.4 Structure


[1-104]:
1ni9a_PU1_1-104
CI=4.45


[105-129]:
1ni9a_PU1_105-129
CI=0.07


[130-177]:
1ni9a_PU1_130-177
CI=2.10


[178-242]:
1ni9a_PU1_178-242
CI=2.45


[243-291 ]:
1ni9a_PU1_243-291
CI=4.05


Level 2
PU
Molecule needs Java 1.4 Structure


[1-104]:
1ni9a_PU2_1-104
CI=4.45


[105-129]:
1ni9a_PU2_105-129
CI=0.07


[130-150]:
1ni9a_PU2_130-150
CI=0.79


[151-177]:
1ni9a_PU2_151-177
CI=2.44


[178-242]:
1ni9a_PU2_178-242
CI=2.45


[243-291 ]:
1ni9a_PU2_243-291
CI=4.05


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1ni9a_PU3_1-16
CI=0.00


[17-41]:
1ni9a_PU3_17-41
CI=2.86


[42-104]:
1ni9a_PU3_42-104
CI=4.31


[105-129]:
1ni9a_PU3_105-129
CI=0.07


[130-150]:
1ni9a_PU3_130-150
CI=0.79


[151-177]:
1ni9a_PU3_151-177
CI=2.44


[178-242]:
1ni9a_PU3_178-242
CI=2.45


[243-291 ]:
1ni9a_PU3_243-291
CI=4.05


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1ni9a_PU4_1-16
CI=0.00


[17-41]:
1ni9a_PU4_17-41
CI=2.86


[42-104]:
1ni9a_PU4_42-104
CI=4.31


[105-129]:
1ni9a_PU4_105-129
CI=0.07


[130-150]:
1ni9a_PU4_130-150
CI=0.79


[151-177]:
1ni9a_PU4_151-177
CI=2.44


[178-219]:
1ni9a_PU4_178-219
CI=1.71


[220-242]:
1ni9a_PU4_220-242
CI=1.56


[243-291 ]:
1ni9a_PU4_243-291
CI=4.05


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1ni9a_PU5_1-16
CI=0.00


[17-41]:
1ni9a_PU5_17-41
CI=2.86


[42-78]:
1ni9a_PU5_42-78
CI=3.53


[79-104]:
1ni9a_PU5_79-104
CI=3.07


[105-129]:
1ni9a_PU5_105-129
CI=0.07


[130-150]:
1ni9a_PU5_130-150
CI=0.79


[151-177]:
1ni9a_PU5_151-177
CI=2.44


[178-219]:
1ni9a_PU5_178-219
CI=1.71


[220-242]:
1ni9a_PU5_220-242
CI=1.56


[243-291 ]:
1ni9a_PU5_243-291
CI=4.05


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1ni9a_PU6_1-16
CI=0.00


[17-41]:
1ni9a_PU6_17-41
CI=2.86


[42-78]:
1ni9a_PU6_42-78
CI=3.53


[79-104]:
1ni9a_PU6_79-104
CI=3.07


[105-129]:
1ni9a_PU6_105-129
CI=0.07


[130-150]:
1ni9a_PU6_130-150
CI=0.79


[151-177]:
1ni9a_PU6_151-177
CI=2.44


[178-196]:
1ni9a_PU6_178-196
CI=1.05


[197-219]:
1ni9a_PU6_197-219
CI=0.48


[220-242]:
1ni9a_PU6_220-242
CI=1.56


[243-291 ]:
1ni9a_PU6_243-291
CI=4.05


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1ni9a_PU7_1-16
CI=0.00


[17-41]:
1ni9a_PU7_17-41
CI=2.86


[42-78]:
1ni9a_PU7_42-78
CI=3.53


[79-104]:
1ni9a_PU7_79-104
CI=3.07


[105-129]:
1ni9a_PU7_105-129
CI=0.07


[130-150]:
1ni9a_PU7_130-150
CI=0.79


[151-177]:
1ni9a_PU7_151-177
CI=2.44


[178-196]:
1ni9a_PU7_178-196
CI=1.05


[197-219]:
1ni9a_PU7_197-219
CI=0.48


[220-242]:
1ni9a_PU7_220-242
CI=1.56


[243-260]:
1ni9a_PU7_243-260
CI=1.54


[261-291 ]:
1ni9a_PU7_261-291
CI=2.65


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-16]:
1ni9a_PU_1-16
CI=0.00


[17-41]:
1ni9a_PU_17-41
CI=2.86


[42-58]:
1ni9a_PU_42-58
CI=0.10


[59-78]:
1ni9a_PU_59-78
CI=0.57


[79-104]:
1ni9a_PU_79-104
CI=3.07


[105-129]:
1ni9a_PU_105-129
CI=0.07


[130-150]:
1ni9a_PU_130-150
CI=0.79


[151-177]:
1ni9a_PU_151-177
CI=2.44


[178-196]:
1ni9a_PU_178-196
CI=1.05


[197-219]:
1ni9a_PU_197-219
CI=0.48


[220-242]:
1ni9a_PU_220-242
CI=1.56


[243-260]:
1ni9a_PU_243-260
CI=1.54


[261-291 ]:
1ni9a_PU_261-291
CI=2.65