Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-114]:
1nkia_PU0_1-114
CI=3.72


[115-134 ]:
1nkia_PU0_115-134
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-55]:
1nkia_PU1_1-55
CI=3.52


[56-114]:
1nkia_PU1_56-114
CI=3.26


[115-134 ]:
1nkia_PU1_115-134
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-55]:
1nkia_PU2_1-55
CI=3.52


[56-71]:
1nkia_PU2_56-71
CI=0.00


[72-89]:
1nkia_PU2_72-89
CI=0.00


[90-114]:
1nkia_PU2_90-114
CI=2.80


[115-134 ]:
1nkia_PU2_115-134
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-27]:
1nkia_PU_1-27
CI=0.07


[28-55]:
1nkia_PU_28-55
CI=2.71


[56-71]:
1nkia_PU_56-71
CI=0.00


[72-89]:
1nkia_PU_72-89
CI=0.00


[90-114]:
1nkia_PU_90-114
CI=2.80


[115-134 ]:
1nkia_PU_115-134
CI=0.00