Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-29]:
1nnxa_PU0_1-29
CI=1.42


[30-70]:
1nnxa_PU0_30-70
CI=3.18


[71-93 ]:
1nnxa_PU0_71-93
CI=2.97


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-29]:
1nnxa_PU_1-29
CI=1.42


[30-54]:
1nnxa_PU_30-54
CI=3.48


[55-70]:
1nnxa_PU_55-70
CI=0.11


[71-93 ]:
1nnxa_PU_71-93
CI=2.97