Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1npsa_PU0_1-19
CI=2.67


[20-35]:
1npsa_PU0_20-35
CI=0.46


[36-88 ]:
1npsa_PU0_36-88
CI=5.09


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1npsa_PU1_1-19
CI=2.67


[20-35]:
1npsa_PU1_20-35
CI=0.46


[36-69]:
1npsa_PU1_36-69
CI=3.07


[70-88 ]:
1npsa_PU1_70-88
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-19]:
1npsa_PU_1-19
CI=2.67


[20-35]:
1npsa_PU_20-35
CI=0.46


[36-53]:
1npsa_PU_36-53
CI=0.30


[54-69]:
1npsa_PU_54-69
CI=0.22


[70-88 ]:
1npsa_PU_70-88
CI=0.00