Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-37]:
1ns5a_PU0_1-37
CI=2.12


[38-53]:
1ns5a_PU0_38-53
CI=0.80


[54-149 ]:
1ns5a_PU0_54-149
CI=2.67


Level 1
PU
Molecule needs Java 1.4 Structure


[1-37]:
1ns5a_PU1_1-37
CI=2.12


[38-53]:
1ns5a_PU1_38-53
CI=0.80


[54-132]:
1ns5a_PU1_54-132
CI=2.71


[133-149 ]:
1ns5a_PU1_133-149
CI=0.75


Level 2
PU
Molecule needs Java 1.4 Structure


[1-37]:
1ns5a_PU2_1-37
CI=2.12


[38-53]:
1ns5a_PU2_38-53
CI=0.80


[54-74]:
1ns5a_PU2_54-74
CI=0.00


[75-93]:
1ns5a_PU2_75-93
CI=0.09


[94-132]:
1ns5a_PU2_94-132
CI=0.92


[133-149 ]:
1ns5a_PU2_133-149
CI=0.75


Level 3
PU
Molecule needs Java 1.4 Structure


[1-37]:
1ns5a_PU3_1-37
CI=2.12


[38-53]:
1ns5a_PU3_38-53
CI=0.80


[54-74]:
1ns5a_PU3_54-74
CI=0.00


[75-93]:
1ns5a_PU3_75-93
CI=0.09


[94-115]:
1ns5a_PU3_94-115
CI=0.33


[116-132]:
1ns5a_PU3_116-132
CI=0.32


[133-149 ]:
1ns5a_PU3_133-149
CI=0.75


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-18]:
1ns5a_PU_1-18
CI=0.00


[19-37]:
1ns5a_PU_19-37
CI=0.29


[38-53]:
1ns5a_PU_38-53
CI=0.80


[54-74]:
1ns5a_PU_54-74
CI=0.00


[75-93]:
1ns5a_PU_75-93
CI=0.09


[94-115]:
1ns5a_PU_94-115
CI=0.33


[116-132]:
1ns5a_PU_116-132
CI=0.32


[133-149 ]:
1ns5a_PU_133-149
CI=0.75