Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-169]:
1nsza_PU0_1-169
CI=5.02


[170-318]:
1nsza_PU0_170-318
CI=4.76


[319-340 ]:
1nsza_PU0_319-340
CI=0.08


Level 1
PU
Molecule needs Java 1.4 Structure


[1-61]:
1nsza_PU1_1-61
CI=4.01


[62-169]:
1nsza_PU1_62-169
CI=4.54


[170-318]:
1nsza_PU1_170-318
CI=4.76


[319-340 ]:
1nsza_PU1_319-340
CI=0.08


Level 2
PU
Molecule needs Java 1.4 Structure


[1-61]:
1nsza_PU2_1-61
CI=4.01


[62-104]:
1nsza_PU2_62-104
CI=3.43


[105-160]:
1nsza_PU2_105-160
CI=4.02


[161-169]:
1nsza_PU2_161-169
CI=0.00


[170-318]:
1nsza_PU2_170-318
CI=4.76


[319-340 ]:
1nsza_PU2_319-340
CI=0.08


Level 3
PU
Molecule needs Java 1.4 Structure


[1-61]:
1nsza_PU3_1-61
CI=4.01


[62-104]:
1nsza_PU3_62-104
CI=3.43


[105-160]:
1nsza_PU3_105-160
CI=4.02


[161-169]:
1nsza_PU3_161-169
CI=0.00


[170-189]:
1nsza_PU3_170-189
CI=0.92


[190-248]:
1nsza_PU3_190-248
CI=2.77


[249-318]:
1nsza_PU3_249-318
CI=2.95


[319-340 ]:
1nsza_PU3_319-340
CI=0.08


Level 4
PU
Molecule needs Java 1.4 Structure


[1-61]:
1nsza_PU4_1-61
CI=4.01


[62-104]:
1nsza_PU4_62-104
CI=3.43


[105-160]:
1nsza_PU4_105-160
CI=4.02


[161-169]:
1nsza_PU4_161-169
CI=0.00


[170-189]:
1nsza_PU4_170-189
CI=0.92


[190-248]:
1nsza_PU4_190-248
CI=2.77


[249-272]:
1nsza_PU4_249-272
CI=2.20


[273-318]:
1nsza_PU4_273-318
CI=2.96


[319-340 ]:
1nsza_PU4_319-340
CI=0.08


Level 5
PU
Molecule needs Java 1.4 Structure


[1-61]:
1nsza_PU5_1-61
CI=4.01


[62-104]:
1nsza_PU5_62-104
CI=3.43


[105-160]:
1nsza_PU5_105-160
CI=4.02


[161-169]:
1nsza_PU5_161-169
CI=0.00


[170-189]:
1nsza_PU5_170-189
CI=0.92


[190-248]:
1nsza_PU5_190-248
CI=2.77


[249-272]:
1nsza_PU5_249-272
CI=2.20


[273-301]:
1nsza_PU5_273-301
CI=2.54


[302-318]:
1nsza_PU5_302-318
CI=0.86


[319-340 ]:
1nsza_PU5_319-340
CI=0.08


Level 6
PU
Molecule needs Java 1.4 Structure


[1-61]:
1nsza_PU6_1-61
CI=4.01


[62-104]:
1nsza_PU6_62-104
CI=3.43


[105-160]:
1nsza_PU6_105-160
CI=4.02


[161-169]:
1nsza_PU6_161-169
CI=0.00


[170-189]:
1nsza_PU6_170-189
CI=0.92


[190-207]:
1nsza_PU6_190-207
CI=1.64


[208-231]:
1nsza_PU6_208-231
CI=0.47


[232-248]:
1nsza_PU6_232-248
CI=0.11


[249-272]:
1nsza_PU6_249-272
CI=2.20


[273-301]:
1nsza_PU6_273-301
CI=2.54


[302-318]:
1nsza_PU6_302-318
CI=0.86


[319-340 ]:
1nsza_PU6_319-340
CI=0.08


Level 7
PU
Molecule needs Java 1.4 Structure


[1-45]:
1nsza_PU7_1-45
CI=3.75


[46-61]:
1nsza_PU7_46-61
CI=0.90


[62-104]:
1nsza_PU7_62-104
CI=3.43


[105-160]:
1nsza_PU7_105-160
CI=4.02


[161-169]:
1nsza_PU7_161-169
CI=0.00


[170-189]:
1nsza_PU7_170-189
CI=0.92


[190-207]:
1nsza_PU7_190-207
CI=1.64


[208-231]:
1nsza_PU7_208-231
CI=0.47


[232-248]:
1nsza_PU7_232-248
CI=0.11


[249-272]:
1nsza_PU7_249-272
CI=2.20


[273-301]:
1nsza_PU7_273-301
CI=2.54


[302-318]:
1nsza_PU7_302-318
CI=0.86


[319-340 ]:
1nsza_PU7_319-340
CI=0.08


Level 8
PU
Molecule needs Java 1.4 Structure


[1-45]:
1nsza_PU8_1-45
CI=3.75


[46-61]:
1nsza_PU8_46-61
CI=0.90


[62-104]:
1nsza_PU8_62-104
CI=3.43


[105-122]:
1nsza_PU8_105-122
CI=1.98


[123-160]:
1nsza_PU8_123-160
CI=3.19


[161-169]:
1nsza_PU8_161-169
CI=0.00


[170-189]:
1nsza_PU8_170-189
CI=0.92


[190-207]:
1nsza_PU8_190-207
CI=1.64


[208-231]:
1nsza_PU8_208-231
CI=0.47


[232-248]:
1nsza_PU8_232-248
CI=0.11


[249-272]:
1nsza_PU8_249-272
CI=2.20


[273-301]:
1nsza_PU8_273-301
CI=2.54


[302-318]:
1nsza_PU8_302-318
CI=0.86


[319-340 ]:
1nsza_PU8_319-340
CI=0.08


Level 9
PU
Molecule needs Java 1.4 Structure


[1-45]:
1nsza_PU9_1-45
CI=3.75


[46-61]:
1nsza_PU9_46-61
CI=0.90


[62-104]:
1nsza_PU9_62-104
CI=3.43


[105-122]:
1nsza_PU9_105-122
CI=1.98


[123-139]:
1nsza_PU9_123-139
CI=2.41


[140-160]:
1nsza_PU9_140-160
CI=1.70


[161-169]:
1nsza_PU9_161-169
CI=0.00


[170-189]:
1nsza_PU9_170-189
CI=0.92


[190-207]:
1nsza_PU9_190-207
CI=1.64


[208-231]:
1nsza_PU9_208-231
CI=0.47


[232-248]:
1nsza_PU9_232-248
CI=0.11


[249-272]:
1nsza_PU9_249-272
CI=2.20


[273-301]:
1nsza_PU9_273-301
CI=2.54


[302-318]:
1nsza_PU9_302-318
CI=0.86


[319-340 ]:
1nsza_PU9_319-340
CI=0.08


Level 10
PU
Molecule needs Java 1.4 Structure


[1-29]:
1nsza_PU10_1-29
CI=3.29


[30-45]:
1nsza_PU10_30-45
CI=1.37


[46-61]:
1nsza_PU10_46-61
CI=0.90


[62-104]:
1nsza_PU10_62-104
CI=3.43


[105-122]:
1nsza_PU10_105-122
CI=1.98


[123-139]:
1nsza_PU10_123-139
CI=2.41


[140-160]:
1nsza_PU10_140-160
CI=1.70


[161-169]:
1nsza_PU10_161-169
CI=0.00


[170-189]:
1nsza_PU10_170-189
CI=0.92


[190-207]:
1nsza_PU10_190-207
CI=1.64


[208-231]:
1nsza_PU10_208-231
CI=0.47


[232-248]:
1nsza_PU10_232-248
CI=0.11


[249-272]:
1nsza_PU10_249-272
CI=2.20


[273-301]:
1nsza_PU10_273-301
CI=2.54


[302-318]:
1nsza_PU10_302-318
CI=0.86


[319-340 ]:
1nsza_PU10_319-340
CI=0.08


Final level 11

PU
Molecule needs Java 1.4 Structure


[1-29]:
1nsza_PU_1-29
CI=3.29


[30-45]:
1nsza_PU_30-45
CI=1.37


[46-61]:
1nsza_PU_46-61
CI=0.90


[62-85]:
1nsza_PU_62-85
CI=0.95


[86-104]:
1nsza_PU_86-104
CI=1.27


[105-122]:
1nsza_PU_105-122
CI=1.98


[123-139]:
1nsza_PU_123-139
CI=2.41


[140-160]:
1nsza_PU_140-160
CI=1.70


[161-169]:
1nsza_PU_161-169
CI=0.00


[170-189]:
1nsza_PU_170-189
CI=0.92


[190-207]:
1nsza_PU_190-207
CI=1.64


[208-231]:
1nsza_PU_208-231
CI=0.47


[232-248]:
1nsza_PU_232-248
CI=0.11


[249-272]:
1nsza_PU_249-272
CI=2.20


[273-301]:
1nsza_PU_273-301
CI=2.54


[302-318]:
1nsza_PU_302-318
CI=0.86


[319-340 ]:
1nsza_PU_319-340
CI=0.08