Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-84]:
1nyka_PU0_1-84
CI=4.01


[85-130]:
1nyka_PU0_85-130
CI=4.79


[131-156 ]:
1nyka_PU0_131-156
CI=2.19


Level 1
PU
Molecule needs Java 1.4 Structure


[1-61]:
1nyka_PU1_1-61
CI=3.82


[62-84]:
1nyka_PU1_62-84
CI=1.85


[85-130]:
1nyka_PU1_85-130
CI=4.79


[131-156 ]:
1nyka_PU1_131-156
CI=2.19


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1nyka_PU2_1-17
CI=0.00


[18-35]:
1nyka_PU2_18-35
CI=0.00


[36-61]:
1nyka_PU2_36-61
CI=2.84


[62-84]:
1nyka_PU2_62-84
CI=1.85


[85-130]:
1nyka_PU2_85-130
CI=4.79


[131-156 ]:
1nyka_PU2_131-156
CI=2.19


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1nyka_PU_1-17
CI=0.00


[18-35]:
1nyka_PU_18-35
CI=0.00


[36-61]:
1nyka_PU_36-61
CI=2.84


[62-84]:
1nyka_PU_62-84
CI=1.85


[85-110]:
1nyka_PU_85-110
CI=2.75


[111-130]:
1nyka_PU_111-130
CI=2.98


[131-156 ]:
1nyka_PU_131-156
CI=2.19