Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-58]:
1nzea_PU0_1-58
CI=2.10


[59-112 ]:
1nzea_PU0_59-112
CI=1.30


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1nzea_PU1_1-17
CI=0.20


[18-45]:
1nzea_PU1_18-45
CI=1.41


[46-58]:
1nzea_PU1_46-58
CI=0.00


[59-112 ]:
1nzea_PU1_59-112
CI=1.30


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1nzea_PU2_1-17
CI=0.20


[18-45]:
1nzea_PU2_18-45
CI=1.41


[46-58]:
1nzea_PU2_46-58
CI=0.00


[59-75]:
1nzea_PU2_59-75
CI=0.00


[76-112 ]:
1nzea_PU2_76-112
CI=1.12


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1nzea_PU_1-17
CI=0.20


[18-45]:
1nzea_PU_18-45
CI=1.41


[46-58]:
1nzea_PU_46-58
CI=0.00


[59-75]:
1nzea_PU_59-75
CI=0.00


[76-96]:
1nzea_PU_76-96
CI=1.23


[97-112 ]:
1nzea_PU_97-112
CI=0.00