Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-56]:
1o22a_PU0_1-56
CI=1.51


[57-89]:
1o22a_PU0_57-89
CI=1.73


[90-146 ]:
1o22a_PU0_90-146
CI=0.92


Level 1
PU
Molecule needs Java 1.4 Structure


[1-56]:
1o22a_PU1_1-56
CI=1.51


[57-89]:
1o22a_PU1_57-89
CI=1.73


[90-115]:
1o22a_PU1_90-115
CI=1.61


[116-146 ]:
1o22a_PU1_116-146
CI=0.25


Level 2
PU
Molecule needs Java 1.4 Structure


[1-40]:
1o22a_PU2_1-40
CI=1.24


[41-56]:
1o22a_PU2_41-56
CI=0.33


[57-89]:
1o22a_PU2_57-89
CI=1.73


[90-115]:
1o22a_PU2_90-115
CI=1.61


[116-146 ]:
1o22a_PU2_116-146
CI=0.25


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1o22a_PU3_1-19
CI=0.00


[20-40]:
1o22a_PU3_20-40
CI=0.79


[41-56]:
1o22a_PU3_41-56
CI=0.33


[57-89]:
1o22a_PU3_57-89
CI=1.73


[90-115]:
1o22a_PU3_90-115
CI=1.61


[116-146 ]:
1o22a_PU3_116-146
CI=0.25


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-19]:
1o22a_PU_1-19
CI=0.00


[20-40]:
1o22a_PU_20-40
CI=0.79


[41-56]:
1o22a_PU_41-56
CI=0.33


[57-73]:
1o22a_PU_57-73
CI=0.00


[74-89]:
1o22a_PU_74-89
CI=0.00


[90-115]:
1o22a_PU_90-115
CI=1.61


[116-146 ]:
1o22a_PU_116-146
CI=0.25