Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-170]:
1o2da_PU0_1-170
CI=4.32


[171-348 ]:
1o2da_PU0_171-348
CI=3.04


Level 1
PU
Molecule needs Java 1.4 Structure


[1-170]:
1o2da_PU1_1-170
CI=4.32


[171-244]:
1o2da_PU1_171-244
CI=2.82


[245-348 ]:
1o2da_PU1_245-348
CI=1.98


Level 2
PU
Molecule needs Java 1.4 Structure


[1-170]:
1o2da_PU2_1-170
CI=4.32


[171-244]:
1o2da_PU2_171-244
CI=2.82


[245-274]:
1o2da_PU2_245-274
CI=1.44


[275-301]:
1o2da_PU2_275-301
CI=0.62


[302-348 ]:
1o2da_PU2_302-348
CI=0.89


Level 3
PU
Molecule needs Java 1.4 Structure


[1-25]:
1o2da_PU3_1-25
CI=0.07


[26-161]:
1o2da_PU3_26-161
CI=4.25


[162-170]:
1o2da_PU3_162-170
CI=0.00


[171-244]:
1o2da_PU3_171-244
CI=2.82


[245-274]:
1o2da_PU3_245-274
CI=1.44


[275-301]:
1o2da_PU3_275-301
CI=0.62


[302-348 ]:
1o2da_PU3_302-348
CI=0.89


Level 4
PU
Molecule needs Java 1.4 Structure


[1-25]:
1o2da_PU4_1-25
CI=0.07


[26-41]:
1o2da_PU4_26-41
CI=0.00


[42-57]:
1o2da_PU4_42-57
CI=0.00


[58-161]:
1o2da_PU4_58-161
CI=3.85


[162-170]:
1o2da_PU4_162-170
CI=0.00


[171-244]:
1o2da_PU4_171-244
CI=2.82


[245-274]:
1o2da_PU4_245-274
CI=1.44


[275-301]:
1o2da_PU4_275-301
CI=0.62


[302-348 ]:
1o2da_PU4_302-348
CI=0.89


Level 5
PU
Molecule needs Java 1.4 Structure


[1-25]:
1o2da_PU5_1-25
CI=0.07


[26-41]:
1o2da_PU5_26-41
CI=0.00


[42-57]:
1o2da_PU5_42-57
CI=0.00


[58-108]:
1o2da_PU5_58-108
CI=1.69


[109-124]:
1o2da_PU5_109-124
CI=0.45


[125-161]:
1o2da_PU5_125-161
CI=2.28


[162-170]:
1o2da_PU5_162-170
CI=0.00


[171-244]:
1o2da_PU5_171-244
CI=2.82


[245-274]:
1o2da_PU5_245-274
CI=1.44


[275-301]:
1o2da_PU5_275-301
CI=0.62


[302-348 ]:
1o2da_PU5_302-348
CI=0.89


Level 6
PU
Molecule needs Java 1.4 Structure


[1-25]:
1o2da_PU6_1-25
CI=0.07


[26-41]:
1o2da_PU6_26-41
CI=0.00


[42-57]:
1o2da_PU6_42-57
CI=0.00


[58-108]:
1o2da_PU6_58-108
CI=1.69


[109-124]:
1o2da_PU6_109-124
CI=0.45


[125-143]:
1o2da_PU6_125-143
CI=0.68


[144-161]:
1o2da_PU6_144-161
CI=2.08


[162-170]:
1o2da_PU6_162-170
CI=0.00


[171-244]:
1o2da_PU6_171-244
CI=2.82


[245-274]:
1o2da_PU6_245-274
CI=1.44


[275-301]:
1o2da_PU6_275-301
CI=0.62


[302-348 ]:
1o2da_PU6_302-348
CI=0.89


Level 7
PU
Molecule needs Java 1.4 Structure


[1-25]:
1o2da_PU7_1-25
CI=0.07


[26-41]:
1o2da_PU7_26-41
CI=0.00


[42-57]:
1o2da_PU7_42-57
CI=0.00


[58-108]:
1o2da_PU7_58-108
CI=1.69


[109-124]:
1o2da_PU7_109-124
CI=0.45


[125-143]:
1o2da_PU7_125-143
CI=0.68


[144-161]:
1o2da_PU7_144-161
CI=2.08


[162-170]:
1o2da_PU7_162-170
CI=0.00


[171-244]:
1o2da_PU7_171-244
CI=2.82


[245-274]:
1o2da_PU7_245-274
CI=1.44


[275-301]:
1o2da_PU7_275-301
CI=0.62


[302-319]:
1o2da_PU7_302-319
CI=0.00


[320-348 ]:
1o2da_PU7_320-348
CI=0.45


Level 8
PU
Molecule needs Java 1.4 Structure


[1-25]:
1o2da_PU8_1-25
CI=0.07


[26-41]:
1o2da_PU8_26-41
CI=0.00


[42-57]:
1o2da_PU8_42-57
CI=0.00


[58-108]:
1o2da_PU8_58-108
CI=1.69


[109-124]:
1o2da_PU8_109-124
CI=0.45


[125-143]:
1o2da_PU8_125-143
CI=0.68


[144-161]:
1o2da_PU8_144-161
CI=2.08


[162-170]:
1o2da_PU8_162-170
CI=0.00


[171-203]:
1o2da_PU8_171-203
CI=0.39


[204-235]:
1o2da_PU8_204-235
CI=1.18


[236-244]:
1o2da_PU8_236-244
CI=0.00


[245-274]:
1o2da_PU8_245-274
CI=1.44


[275-301]:
1o2da_PU8_275-301
CI=0.62


[302-319]:
1o2da_PU8_302-319
CI=0.00


[320-348 ]:
1o2da_PU8_320-348
CI=0.45


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-25]:
1o2da_PU_1-25
CI=0.07


[26-41]:
1o2da_PU_26-41
CI=0.00


[42-57]:
1o2da_PU_42-57
CI=0.00


[58-108]:
1o2da_PU_58-108
CI=1.69


[109-124]:
1o2da_PU_109-124
CI=0.45


[125-143]:
1o2da_PU_125-143
CI=0.68


[144-161]:
1o2da_PU_144-161
CI=2.08


[162-170]:
1o2da_PU_162-170
CI=0.00


[171-187]:
1o2da_PU_171-187
CI=0.10


[188-203]:
1o2da_PU_188-203
CI=0.67


[204-235]:
1o2da_PU_204-235
CI=1.18


[236-244]:
1o2da_PU_236-244
CI=0.00


[245-274]:
1o2da_PU_245-274
CI=1.44


[275-301]:
1o2da_PU_275-301
CI=0.62


[302-319]:
1o2da_PU_302-319
CI=0.00


[320-348 ]:
1o2da_PU_320-348
CI=0.45