Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-78]:
1o3ua_PU0_1-78
CI=2.62


[79-96]:
1o3ua_PU0_79-96
CI=0.10


[97-119 ]:
1o3ua_PU0_97-119
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-46]:
1o3ua_PU1_1-46
CI=2.58


[47-78]:
1o3ua_PU1_47-78
CI=1.41


[79-96]:
1o3ua_PU1_79-96
CI=0.10


[97-119 ]:
1o3ua_PU1_97-119
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-30]:
1o3ua_PU_1-30
CI=1.82


[31-46]:
1o3ua_PU_31-46
CI=0.00


[47-78]:
1o3ua_PU_47-78
CI=1.41


[79-96]:
1o3ua_PU_79-96
CI=0.10


[97-119 ]:
1o3ua_PU_97-119
CI=0.00