Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-44]:
1o58a_PU0_1-44
CI=2.16


[45-133]:
1o58a_PU0_45-133
CI=3.88


[134-293 ]:
1o58a_PU0_134-293
CI=4.29


Level 1
PU
Molecule needs Java 1.4 Structure


[1-44]:
1o58a_PU1_1-44
CI=2.16


[45-133]:
1o58a_PU1_45-133
CI=3.88


[134-236]:
1o58a_PU1_134-236
CI=4.12


[237-293 ]:
1o58a_PU1_237-293
CI=2.45


Level 2
PU
Molecule needs Java 1.4 Structure


[1-44]:
1o58a_PU2_1-44
CI=2.16


[45-133]:
1o58a_PU2_45-133
CI=3.88


[134-195]:
1o58a_PU2_134-195
CI=2.66


[196-219]:
1o58a_PU2_196-219
CI=2.50


[220-236]:
1o58a_PU2_220-236
CI=0.00


[237-293 ]:
1o58a_PU2_237-293
CI=2.45


Level 3
PU
Molecule needs Java 1.4 Structure


[1-44]:
1o58a_PU3_1-44
CI=2.16


[45-61]:
1o58a_PU3_45-61
CI=0.11


[62-119]:
1o58a_PU3_62-119
CI=3.27


[120-133]:
1o58a_PU3_120-133
CI=0.65


[134-195]:
1o58a_PU3_134-195
CI=2.66


[196-219]:
1o58a_PU3_196-219
CI=2.50


[220-236]:
1o58a_PU3_220-236
CI=0.00


[237-293 ]:
1o58a_PU3_237-293
CI=2.45


Level 4
PU
Molecule needs Java 1.4 Structure


[1-44]:
1o58a_PU4_1-44
CI=2.16


[45-61]:
1o58a_PU4_45-61
CI=0.11


[62-119]:
1o58a_PU4_62-119
CI=3.27


[120-133]:
1o58a_PU4_120-133
CI=0.65


[134-195]:
1o58a_PU4_134-195
CI=2.66


[196-219]:
1o58a_PU4_196-219
CI=2.50


[220-236]:
1o58a_PU4_220-236
CI=0.00


[237-263]:
1o58a_PU4_237-263
CI=2.03


[264-293 ]:
1o58a_PU4_264-293
CI=0.50


Level 5
PU
Molecule needs Java 1.4 Structure


[1-44]:
1o58a_PU5_1-44
CI=2.16


[45-61]:
1o58a_PU5_45-61
CI=0.11


[62-119]:
1o58a_PU5_62-119
CI=3.27


[120-133]:
1o58a_PU5_120-133
CI=0.65


[134-159]:
1o58a_PU5_134-159
CI=0.21


[160-195]:
1o58a_PU5_160-195
CI=2.06


[196-219]:
1o58a_PU5_196-219
CI=2.50


[220-236]:
1o58a_PU5_220-236
CI=0.00


[237-263]:
1o58a_PU5_237-263
CI=2.03


[264-293 ]:
1o58a_PU5_264-293
CI=0.50


Level 6
PU
Molecule needs Java 1.4 Structure


[1-44]:
1o58a_PU6_1-44
CI=2.16


[45-61]:
1o58a_PU6_45-61
CI=0.11


[62-79]:
1o58a_PU6_62-79
CI=0.00


[80-119]:
1o58a_PU6_80-119
CI=2.86


[120-133]:
1o58a_PU6_120-133
CI=0.65


[134-159]:
1o58a_PU6_134-159
CI=0.21


[160-195]:
1o58a_PU6_160-195
CI=2.06


[196-219]:
1o58a_PU6_196-219
CI=2.50


[220-236]:
1o58a_PU6_220-236
CI=0.00


[237-263]:
1o58a_PU6_237-263
CI=2.03


[264-293 ]:
1o58a_PU6_264-293
CI=0.50


Level 7
PU
Molecule needs Java 1.4 Structure


[1-21]:
1o58a_PU7_1-21
CI=0.09


[22-44]:
1o58a_PU7_22-44
CI=0.73


[45-61]:
1o58a_PU7_45-61
CI=0.11


[62-79]:
1o58a_PU7_62-79
CI=0.00


[80-119]:
1o58a_PU7_80-119
CI=2.86


[120-133]:
1o58a_PU7_120-133
CI=0.65


[134-159]:
1o58a_PU7_134-159
CI=0.21


[160-195]:
1o58a_PU7_160-195
CI=2.06


[196-219]:
1o58a_PU7_196-219
CI=2.50


[220-236]:
1o58a_PU7_220-236
CI=0.00


[237-263]:
1o58a_PU7_237-263
CI=2.03


[264-293 ]:
1o58a_PU7_264-293
CI=0.50


Level 8
PU
Molecule needs Java 1.4 Structure


[1-21]:
1o58a_PU8_1-21
CI=0.09


[22-44]:
1o58a_PU8_22-44
CI=0.73


[45-61]:
1o58a_PU8_45-61
CI=0.11


[62-79]:
1o58a_PU8_62-79
CI=0.00


[80-119]:
1o58a_PU8_80-119
CI=2.86


[120-133]:
1o58a_PU8_120-133
CI=0.65


[134-159]:
1o58a_PU8_134-159
CI=0.21


[160-176]:
1o58a_PU8_160-176
CI=0.85


[177-195]:
1o58a_PU8_177-195
CI=0.29


[196-219]:
1o58a_PU8_196-219
CI=2.50


[220-236]:
1o58a_PU8_220-236
CI=0.00


[237-263]:
1o58a_PU8_237-263
CI=2.03


[264-293 ]:
1o58a_PU8_264-293
CI=0.50


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-21]:
1o58a_PU_1-21
CI=0.09


[22-44]:
1o58a_PU_22-44
CI=0.73


[45-61]:
1o58a_PU_45-61
CI=0.11


[62-79]:
1o58a_PU_62-79
CI=0.00


[80-101]:
1o58a_PU_80-101
CI=0.00


[102-119]:
1o58a_PU_102-119
CI=0.82


[120-133]:
1o58a_PU_120-133
CI=0.65


[134-159]:
1o58a_PU_134-159
CI=0.21


[160-176]:
1o58a_PU_160-176
CI=0.85


[177-195]:
1o58a_PU_177-195
CI=0.29


[196-219]:
1o58a_PU_196-219
CI=2.50


[220-236]:
1o58a_PU_220-236
CI=0.00


[237-263]:
1o58a_PU_237-263
CI=2.03


[264-293 ]:
1o58a_PU_264-293
CI=0.50