Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-215]:
1o7ja_PU0_1-215
CI=5.20


[216-325 ]:
1o7ja_PU0_216-325
CI=3.87


Level 1
PU
Molecule needs Java 1.4 Structure


[1-154]:
1o7ja_PU1_1-154
CI=5.00


[155-199]:
1o7ja_PU1_155-199
CI=2.93


[200-215]:
1o7ja_PU1_200-215
CI=0.21


[216-325 ]:
1o7ja_PU1_216-325
CI=3.87


Level 2
PU
Molecule needs Java 1.4 Structure


[1-154]:
1o7ja_PU2_1-154
CI=5.00


[155-199]:
1o7ja_PU2_155-199
CI=2.93


[200-215]:
1o7ja_PU2_200-215
CI=0.21


[216-306]:
1o7ja_PU2_216-306
CI=4.10


[307-325 ]:
1o7ja_PU2_307-325
CI=0.28


Level 3
PU
Molecule needs Java 1.4 Structure


[1-154]:
1o7ja_PU3_1-154
CI=5.00


[155-182]:
1o7ja_PU3_155-182
CI=2.28


[183-199]:
1o7ja_PU3_183-199
CI=1.65


[200-215]:
1o7ja_PU3_200-215
CI=0.21


[216-306]:
1o7ja_PU3_216-306
CI=4.10


[307-325 ]:
1o7ja_PU3_307-325
CI=0.28


Level 4
PU
Molecule needs Java 1.4 Structure


[1-63]:
1o7ja_PU4_1-63
CI=3.04


[64-84]:
1o7ja_PU4_64-84
CI=0.09


[85-154]:
1o7ja_PU4_85-154
CI=3.78


[155-182]:
1o7ja_PU4_155-182
CI=2.28


[183-199]:
1o7ja_PU4_183-199
CI=1.65


[200-215]:
1o7ja_PU4_200-215
CI=0.21


[216-306]:
1o7ja_PU4_216-306
CI=4.10


[307-325 ]:
1o7ja_PU4_307-325
CI=0.28


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1o7ja_PU5_1-16
CI=0.00


[17-32]:
1o7ja_PU5_17-32
CI=0.91


[33-63]:
1o7ja_PU5_33-63
CI=0.42


[64-84]:
1o7ja_PU5_64-84
CI=0.09


[85-154]:
1o7ja_PU5_85-154
CI=3.78


[155-182]:
1o7ja_PU5_155-182
CI=2.28


[183-199]:
1o7ja_PU5_183-199
CI=1.65


[200-215]:
1o7ja_PU5_200-215
CI=0.21


[216-306]:
1o7ja_PU5_216-306
CI=4.10


[307-325 ]:
1o7ja_PU5_307-325
CI=0.28


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1o7ja_PU6_1-16
CI=0.00


[17-32]:
1o7ja_PU6_17-32
CI=0.91


[33-63]:
1o7ja_PU6_33-63
CI=0.42


[64-84]:
1o7ja_PU6_64-84
CI=0.09


[85-154]:
1o7ja_PU6_85-154
CI=3.78


[155-182]:
1o7ja_PU6_155-182
CI=2.28


[183-199]:
1o7ja_PU6_183-199
CI=1.65


[200-215]:
1o7ja_PU6_200-215
CI=0.21


[216-274]:
1o7ja_PU6_216-274
CI=3.06


[275-306]:
1o7ja_PU6_275-306
CI=1.70


[307-325 ]:
1o7ja_PU6_307-325
CI=0.28


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1o7ja_PU7_1-16
CI=0.00


[17-32]:
1o7ja_PU7_17-32
CI=0.91


[33-63]:
1o7ja_PU7_33-63
CI=0.42


[64-84]:
1o7ja_PU7_64-84
CI=0.09


[85-115]:
1o7ja_PU7_85-115
CI=1.64


[116-154]:
1o7ja_PU7_116-154
CI=1.93


[155-182]:
1o7ja_PU7_155-182
CI=2.28


[183-199]:
1o7ja_PU7_183-199
CI=1.65


[200-215]:
1o7ja_PU7_200-215
CI=0.21


[216-274]:
1o7ja_PU7_216-274
CI=3.06


[275-306]:
1o7ja_PU7_275-306
CI=1.70


[307-325 ]:
1o7ja_PU7_307-325
CI=0.28


Level 8
PU
Molecule needs Java 1.4 Structure


[1-16]:
1o7ja_PU8_1-16
CI=0.00


[17-32]:
1o7ja_PU8_17-32
CI=0.91


[33-63]:
1o7ja_PU8_33-63
CI=0.42


[64-84]:
1o7ja_PU8_64-84
CI=0.09


[85-115]:
1o7ja_PU8_85-115
CI=1.64


[116-133]:
1o7ja_PU8_116-133
CI=2.33


[134-154]:
1o7ja_PU8_134-154
CI=0.53


[155-182]:
1o7ja_PU8_155-182
CI=2.28


[183-199]:
1o7ja_PU8_183-199
CI=1.65


[200-215]:
1o7ja_PU8_200-215
CI=0.21


[216-274]:
1o7ja_PU8_216-274
CI=3.06


[275-306]:
1o7ja_PU8_275-306
CI=1.70


[307-325 ]:
1o7ja_PU8_307-325
CI=0.28


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-16]:
1o7ja_PU_1-16
CI=0.00


[17-32]:
1o7ja_PU_17-32
CI=0.91


[33-63]:
1o7ja_PU_33-63
CI=0.42


[64-84]:
1o7ja_PU_64-84
CI=0.09


[85-115]:
1o7ja_PU_85-115
CI=1.64


[116-133]:
1o7ja_PU_116-133
CI=2.33


[134-154]:
1o7ja_PU_134-154
CI=0.53


[155-182]:
1o7ja_PU_155-182
CI=2.28


[183-199]:
1o7ja_PU_183-199
CI=1.65


[200-215]:
1o7ja_PU_200-215
CI=0.21


[216-247]:
1o7ja_PU_216-247
CI=2.14


[248-274]:
1o7ja_PU_248-274
CI=0.49


[275-306]:
1o7ja_PU_275-306
CI=1.70


[307-325 ]:
1o7ja_PU_307-325
CI=0.28