Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1oapa_PU0_1-16
CI=0.78


[17-36]:
1oapa_PU0_17-36
CI=0.09


[37-108 ]:
1oapa_PU0_37-108
CI=4.67


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-16]:
1oapa_PU_1-16
CI=0.78


[17-36]:
1oapa_PU_17-36
CI=0.09


[37-61]:
1oapa_PU_37-61
CI=1.94


[62-81]:
1oapa_PU_62-81
CI=0.89


[82-108 ]:
1oapa_PU_82-108
CI=0.90