Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-156]:
1ofcx_PU0_1-156
CI=1.86


[157-266 ]:
1ofcx_PU0_157-266
CI=1.20


Level 1
PU
Molecule needs Java 1.4 Structure


[1-87]:
1ofcx_PU1_1-87
CI=1.26


[88-156]:
1ofcx_PU1_88-156
CI=1.93


[157-266 ]:
1ofcx_PU1_157-266
CI=1.20


Level 2
PU
Molecule needs Java 1.4 Structure


[1-36]:
1ofcx_PU2_1-36
CI=0.26


[37-69]:
1ofcx_PU2_37-69
CI=1.26


[70-87]:
1ofcx_PU2_70-87
CI=0.00


[88-156]:
1ofcx_PU2_88-156
CI=1.93


[157-266 ]:
1ofcx_PU2_157-266
CI=1.20


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-36]:
1ofcx_PU_1-36
CI=0.26


[37-69]:
1ofcx_PU_37-69
CI=1.26


[70-87]:
1ofcx_PU_70-87
CI=0.00


[88-156]:
1ofcx_PU_88-156
CI=1.93


[157-201]:
1ofcx_PU_157-201
CI=0.58


[202-243]:
1ofcx_PU_202-243
CI=1.21


[244-266 ]:
1ofcx_PU_244-266
CI=0.00