Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-20]:
1oh0a_PU0_1-20
CI=0.00


[21-62]:
1oh0a_PU0_21-62
CI=2.27


[63-125 ]:
1oh0a_PU0_63-125
CI=4.21


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1oh0a_PU1_1-20
CI=0.00


[21-62]:
1oh0a_PU1_21-62
CI=2.27


[63-100]:
1oh0a_PU1_63-100
CI=3.49


[101-125 ]:
1oh0a_PU1_101-125
CI=1.89


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1oh0a_PU2_1-20
CI=0.00


[21-62]:
1oh0a_PU2_21-62
CI=2.27


[63-84]:
1oh0a_PU2_63-84
CI=1.89


[85-100]:
1oh0a_PU2_85-100
CI=1.97


[101-125 ]:
1oh0a_PU2_101-125
CI=1.89


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-20]:
1oh0a_PU_1-20
CI=0.00


[21-46]:
1oh0a_PU_21-46
CI=1.02


[47-62]:
1oh0a_PU_47-62
CI=0.00


[63-84]:
1oh0a_PU_63-84
CI=1.89


[85-100]:
1oh0a_PU_85-100
CI=1.97


[101-125 ]:
1oh0a_PU_101-125
CI=1.89