Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-116]:
1ojra_PU0_1-116
CI=4.05


[117-274 ]:
1ojra_PU0_117-274
CI=3.69


Level 1
PU
Molecule needs Java 1.4 Structure


[1-116]:
1ojra_PU1_1-116
CI=4.05


[117-239]:
1ojra_PU1_117-239
CI=4.00


[240-274 ]:
1ojra_PU1_240-274
CI=0.48


Level 2
PU
Molecule needs Java 1.4 Structure


[1-116]:
1ojra_PU2_1-116
CI=4.05


[117-239]:
1ojra_PU2_117-239
CI=4.00


[240-256]:
1ojra_PU2_240-256
CI=0.11


[257-274 ]:
1ojra_PU2_257-274
CI=0.50


Level 3
PU
Molecule needs Java 1.4 Structure


[1-116]:
1ojra_PU3_1-116
CI=4.05


[117-153]:
1ojra_PU3_117-153
CI=0.82


[154-182]:
1ojra_PU3_154-182
CI=1.57


[183-239]:
1ojra_PU3_183-239
CI=1.72


[240-256]:
1ojra_PU3_240-256
CI=0.11


[257-274 ]:
1ojra_PU3_257-274
CI=0.50


Level 4
PU
Molecule needs Java 1.4 Structure


[1-116]:
1ojra_PU4_1-116
CI=4.05


[117-153]:
1ojra_PU4_117-153
CI=0.82


[154-182]:
1ojra_PU4_154-182
CI=1.57


[183-217]:
1ojra_PU4_183-217
CI=1.74


[218-239]:
1ojra_PU4_218-239
CI=0.33


[240-256]:
1ojra_PU4_240-256
CI=0.11


[257-274 ]:
1ojra_PU4_257-274
CI=0.50


Level 5
PU
Molecule needs Java 1.4 Structure


[1-116]:
1ojra_PU5_1-116
CI=4.05


[117-136]:
1ojra_PU5_117-136
CI=0.56


[137-153]:
1ojra_PU5_137-153
CI=0.00


[154-182]:
1ojra_PU5_154-182
CI=1.57


[183-217]:
1ojra_PU5_183-217
CI=1.74


[218-239]:
1ojra_PU5_218-239
CI=0.33


[240-256]:
1ojra_PU5_240-256
CI=0.11


[257-274 ]:
1ojra_PU5_257-274
CI=0.50


Level 6
PU
Molecule needs Java 1.4 Structure


[1-27]:
1ojra_PU6_1-27
CI=0.42


[28-116]:
1ojra_PU6_28-116
CI=4.27


[117-136]:
1ojra_PU6_117-136
CI=0.56


[137-153]:
1ojra_PU6_137-153
CI=0.00


[154-182]:
1ojra_PU6_154-182
CI=1.57


[183-217]:
1ojra_PU6_183-217
CI=1.74


[218-239]:
1ojra_PU6_218-239
CI=0.33


[240-256]:
1ojra_PU6_240-256
CI=0.11


[257-274 ]:
1ojra_PU6_257-274
CI=0.50


Level 7
PU
Molecule needs Java 1.4 Structure


[1-27]:
1ojra_PU7_1-27
CI=0.42


[28-116]:
1ojra_PU7_28-116
CI=4.27


[117-136]:
1ojra_PU7_117-136
CI=0.56


[137-153]:
1ojra_PU7_137-153
CI=0.00


[154-182]:
1ojra_PU7_154-182
CI=1.57


[183-199]:
1ojra_PU7_183-199
CI=0.54


[200-217]:
1ojra_PU7_200-217
CI=1.56


[218-239]:
1ojra_PU7_218-239
CI=0.33


[240-256]:
1ojra_PU7_240-256
CI=0.11


[257-274 ]:
1ojra_PU7_257-274
CI=0.50


Level 8
PU
Molecule needs Java 1.4 Structure


[1-27]:
1ojra_PU8_1-27
CI=0.42


[28-74]:
1ojra_PU8_28-74
CI=0.98


[75-90]:
1ojra_PU8_75-90
CI=0.90


[91-116]:
1ojra_PU8_91-116
CI=1.89


[117-136]:
1ojra_PU8_117-136
CI=0.56


[137-153]:
1ojra_PU8_137-153
CI=0.00


[154-182]:
1ojra_PU8_154-182
CI=1.57


[183-199]:
1ojra_PU8_183-199
CI=0.54


[200-217]:
1ojra_PU8_200-217
CI=1.56


[218-239]:
1ojra_PU8_218-239
CI=0.33


[240-256]:
1ojra_PU8_240-256
CI=0.11


[257-274 ]:
1ojra_PU8_257-274
CI=0.50


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-27]:
1ojra_PU_1-27
CI=0.42


[28-56]:
1ojra_PU_28-56
CI=0.00


[57-74]:
1ojra_PU_57-74
CI=0.00


[75-90]:
1ojra_PU_75-90
CI=0.90


[91-116]:
1ojra_PU_91-116
CI=1.89


[117-136]:
1ojra_PU_117-136
CI=0.56


[137-153]:
1ojra_PU_137-153
CI=0.00


[154-182]:
1ojra_PU_154-182
CI=1.57


[183-199]:
1ojra_PU_183-199
CI=0.54


[200-217]:
1ojra_PU_200-217
CI=1.56


[218-239]:
1ojra_PU_218-239
CI=0.33


[240-256]:
1ojra_PU_240-256
CI=0.11


[257-274 ]:
1ojra_PU_257-274
CI=0.50