Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1olsa_PU0_1-18
CI=0.51


[19-386 ]:
1olsa_PU0_19-386
CI=3.67


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1olsa_PU1_1-18
CI=0.51


[19-341]:
1olsa_PU1_19-341
CI=3.97


[342-386 ]:
1olsa_PU1_342-386
CI=0.90


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1olsa_PU2_1-18
CI=0.51


[19-157]:
1olsa_PU2_19-157
CI=2.29


[158-280]:
1olsa_PU2_158-280
CI=4.05


[281-341]:
1olsa_PU2_281-341
CI=0.22


[342-386 ]:
1olsa_PU2_342-386
CI=0.90


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1olsa_PU3_1-18
CI=0.51


[19-46]:
1olsa_PU3_19-46
CI=0.67


[47-157]:
1olsa_PU3_47-157
CI=2.69


[158-280]:
1olsa_PU3_158-280
CI=4.05


[281-341]:
1olsa_PU3_281-341
CI=0.22


[342-386 ]:
1olsa_PU3_342-386
CI=0.90


Level 4
PU
Molecule needs Java 1.4 Structure


[1-18]:
1olsa_PU4_1-18
CI=0.51


[19-46]:
1olsa_PU4_19-46
CI=0.67


[47-157]:
1olsa_PU4_47-157
CI=2.69


[158-280]:
1olsa_PU4_158-280
CI=4.05


[281-316]:
1olsa_PU4_281-316
CI=0.36


[317-341]:
1olsa_PU4_317-341
CI=0.00


[342-386 ]:
1olsa_PU4_342-386
CI=0.90


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1olsa_PU5_1-18
CI=0.51


[19-46]:
1olsa_PU5_19-46
CI=0.67


[47-157]:
1olsa_PU5_47-157
CI=2.69


[158-280]:
1olsa_PU5_158-280
CI=4.05


[281-300]:
1olsa_PU5_281-300
CI=0.18


[301-316]:
1olsa_PU5_301-316
CI=0.23


[317-341]:
1olsa_PU5_317-341
CI=0.00


[342-386 ]:
1olsa_PU5_342-386
CI=0.90


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1olsa_PU6_1-18
CI=0.51


[19-46]:
1olsa_PU6_19-46
CI=0.67


[47-86]:
1olsa_PU6_47-86
CI=0.76


[87-157]:
1olsa_PU6_87-157
CI=2.70


[158-280]:
1olsa_PU6_158-280
CI=4.05


[281-300]:
1olsa_PU6_281-300
CI=0.18


[301-316]:
1olsa_PU6_301-316
CI=0.23


[317-341]:
1olsa_PU6_317-341
CI=0.00


[342-386 ]:
1olsa_PU6_342-386
CI=0.90


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1olsa_PU7_1-18
CI=0.51


[19-46]:
1olsa_PU7_19-46
CI=0.67


[47-63]:
1olsa_PU7_47-63
CI=0.00


[64-86]:
1olsa_PU7_64-86
CI=1.05


[87-157]:
1olsa_PU7_87-157
CI=2.70


[158-280]:
1olsa_PU7_158-280
CI=4.05


[281-300]:
1olsa_PU7_281-300
CI=0.18


[301-316]:
1olsa_PU7_301-316
CI=0.23


[317-341]:
1olsa_PU7_317-341
CI=0.00


[342-386 ]:
1olsa_PU7_342-386
CI=0.90


Level 8
PU
Molecule needs Java 1.4 Structure


[1-18]:
1olsa_PU8_1-18
CI=0.51


[19-46]:
1olsa_PU8_19-46
CI=0.67


[47-63]:
1olsa_PU8_47-63
CI=0.00


[64-86]:
1olsa_PU8_64-86
CI=1.05


[87-116]:
1olsa_PU8_87-116
CI=0.99


[117-143]:
1olsa_PU8_117-143
CI=1.73


[144-157]:
1olsa_PU8_144-157
CI=1.83


[158-280]:
1olsa_PU8_158-280
CI=4.05


[281-300]:
1olsa_PU8_281-300
CI=0.18


[301-316]:
1olsa_PU8_301-316
CI=0.23


[317-341]:
1olsa_PU8_317-341
CI=0.00


[342-386 ]:
1olsa_PU8_342-386
CI=0.90


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-18]:
1olsa_PU_1-18
CI=0.51


[19-46]:
1olsa_PU_19-46
CI=0.67


[47-63]:
1olsa_PU_47-63
CI=0.00


[64-86]:
1olsa_PU_64-86
CI=1.05


[87-116]:
1olsa_PU_87-116
CI=0.99


[117-143]:
1olsa_PU_117-143
CI=1.73


[144-157]:
1olsa_PU_144-157
CI=1.83


[158-216]:
1olsa_PU_158-216
CI=3.15


[217-232]:
1olsa_PU_217-232
CI=0.35


[233-280]:
1olsa_PU_233-280
CI=2.75


[281-300]:
1olsa_PU_281-300
CI=0.18


[301-316]:
1olsa_PU_301-316
CI=0.23


[317-341]:
1olsa_PU_317-341
CI=0.00


[342-386 ]:
1olsa_PU_342-386
CI=0.90