Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-62]:
1onwa_PU0_1-62
CI=3.96


[63-329]:
1onwa_PU0_63-329
CI=4.84


[330-375 ]:
1onwa_PU0_330-375
CI=3.21


Level 1
PU
Molecule needs Java 1.4 Structure


[1-62]:
1onwa_PU1_1-62
CI=3.96


[63-133]:
1onwa_PU1_63-133
CI=3.69


[134-228]:
1onwa_PU1_134-228
CI=3.99


[229-329]:
1onwa_PU1_229-329
CI=3.22


[330-375 ]:
1onwa_PU1_330-375
CI=3.21


Level 2
PU
Molecule needs Java 1.4 Structure


[1-62]:
1onwa_PU2_1-62
CI=3.96


[63-133]:
1onwa_PU2_63-133
CI=3.69


[134-228]:
1onwa_PU2_134-228
CI=3.99


[229-296]:
1onwa_PU2_229-296
CI=3.13


[297-329]:
1onwa_PU2_297-329
CI=1.02


[330-375 ]:
1onwa_PU2_330-375
CI=3.21


Level 3
PU
Molecule needs Java 1.4 Structure


[1-62]:
1onwa_PU3_1-62
CI=3.96


[63-133]:
1onwa_PU3_63-133
CI=3.69


[134-228]:
1onwa_PU3_134-228
CI=3.99


[229-296]:
1onwa_PU3_229-296
CI=3.13


[297-329]:
1onwa_PU3_297-329
CI=1.02


[330-359]:
1onwa_PU3_330-359
CI=2.72


[360-375 ]:
1onwa_PU3_360-375
CI=0.91


Level 4
PU
Molecule needs Java 1.4 Structure


[1-62]:
1onwa_PU4_1-62
CI=3.96


[63-133]:
1onwa_PU4_63-133
CI=3.69


[134-202]:
1onwa_PU4_134-202
CI=4.07


[203-228]:
1onwa_PU4_203-228
CI=0.07


[229-296]:
1onwa_PU4_229-296
CI=3.13


[297-329]:
1onwa_PU4_297-329
CI=1.02


[330-359]:
1onwa_PU4_330-359
CI=2.72


[360-375 ]:
1onwa_PU4_360-375
CI=0.91


Level 5
PU
Molecule needs Java 1.4 Structure


[1-62]:
1onwa_PU5_1-62
CI=3.96


[63-112]:
1onwa_PU5_63-112
CI=3.20


[113-133]:
1onwa_PU5_113-133
CI=1.05


[134-202]:
1onwa_PU5_134-202
CI=4.07


[203-228]:
1onwa_PU5_203-228
CI=0.07


[229-296]:
1onwa_PU5_229-296
CI=3.13


[297-329]:
1onwa_PU5_297-329
CI=1.02


[330-359]:
1onwa_PU5_330-359
CI=2.72


[360-375 ]:
1onwa_PU5_360-375
CI=0.91


Level 6
PU
Molecule needs Java 1.4 Structure


[1-62]:
1onwa_PU6_1-62
CI=3.96


[63-112]:
1onwa_PU6_63-112
CI=3.20


[113-133]:
1onwa_PU6_113-133
CI=1.05


[134-202]:
1onwa_PU6_134-202
CI=4.07


[203-228]:
1onwa_PU6_203-228
CI=0.07


[229-275]:
1onwa_PU6_229-275
CI=2.23


[276-296]:
1onwa_PU6_276-296
CI=1.14


[297-329]:
1onwa_PU6_297-329
CI=1.02


[330-359]:
1onwa_PU6_330-359
CI=2.72


[360-375 ]:
1onwa_PU6_360-375
CI=0.91


Level 7
PU
Molecule needs Java 1.4 Structure


[1-62]:
1onwa_PU7_1-62
CI=3.96


[63-112]:
1onwa_PU7_63-112
CI=3.20


[113-133]:
1onwa_PU7_113-133
CI=1.05


[134-161]:
1onwa_PU7_134-161
CI=1.95


[162-178]:
1onwa_PU7_162-178
CI=0.42


[179-202]:
1onwa_PU7_179-202
CI=1.09


[203-228]:
1onwa_PU7_203-228
CI=0.07


[229-275]:
1onwa_PU7_229-275
CI=2.23


[276-296]:
1onwa_PU7_276-296
CI=1.14


[297-329]:
1onwa_PU7_297-329
CI=1.02


[330-359]:
1onwa_PU7_330-359
CI=2.72


[360-375 ]:
1onwa_PU7_360-375
CI=0.91


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-62]:
1onwa_PU_1-62
CI=3.96


[63-112]:
1onwa_PU_63-112
CI=3.20


[113-133]:
1onwa_PU_113-133
CI=1.05


[134-161]:
1onwa_PU_134-161
CI=1.95


[162-178]:
1onwa_PU_162-178
CI=0.42


[179-202]:
1onwa_PU_179-202
CI=1.09


[203-228]:
1onwa_PU_203-228
CI=0.07


[229-253]:
1onwa_PU_229-253
CI=1.43


[254-275]:
1onwa_PU_254-275
CI=0.50


[276-296]:
1onwa_PU_276-296
CI=1.14


[297-329]:
1onwa_PU_297-329
CI=1.02


[330-359]:
1onwa_PU_330-359
CI=2.72


[360-375 ]:
1onwa_PU_360-375
CI=0.91