Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-24]:
1opc0_PU0_1-24
CI=2.98


[25-99 ]:
1opc0_PU0_25-99
CI=3.19


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1opc0_PU1_1-24
CI=2.98


[25-68]:
1opc0_PU1_25-68
CI=2.10


[69-99 ]:
1opc0_PU1_69-99
CI=2.09


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-24]:
1opc0_PU_1-24
CI=2.98


[25-44]:
1opc0_PU_25-44
CI=0.36


[45-68]:
1opc0_PU_45-68
CI=1.01


[69-99 ]:
1opc0_PU_69-99
CI=2.09