Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-21]:
1ou8a_PU0_1-21
CI=0.00


[22-87]:
1ou8a_PU0_22-87
CI=3.99


[88-106 ]:
1ou8a_PU0_88-106
CI=0.87


Level 1
PU
Molecule needs Java 1.4 Structure


[1-21]:
1ou8a_PU1_1-21
CI=0.00


[22-49]:
1ou8a_PU1_22-49
CI=2.23


[50-87]:
1ou8a_PU1_50-87
CI=2.92


[88-106 ]:
1ou8a_PU1_88-106
CI=0.87


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-21]:
1ou8a_PU_1-21
CI=0.00


[22-49]:
1ou8a_PU_22-49
CI=2.23


[50-70]:
1ou8a_PU_50-70
CI=1.96


[71-87]:
1ou8a_PU_71-87
CI=0.00


[88-106 ]:
1ou8a_PU_88-106
CI=0.87