Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-131]:
1ozna_PU0_1-131
CI=5.49


[132-284 ]:
1ozna_PU0_132-284
CI=5.77


Level 1
PU
Molecule needs Java 1.4 Structure


[1-131]:
1ozna_PU1_1-131
CI=5.49


[132-235]:
1ozna_PU1_132-235
CI=6.44


[236-284 ]:
1ozna_PU1_236-284
CI=2.28


Level 2
PU
Molecule needs Java 1.4 Structure


[1-44]:
1ozna_PU2_1-44
CI=3.57


[45-131]:
1ozna_PU2_45-131
CI=5.16


[132-235]:
1ozna_PU2_132-235
CI=6.44


[236-284 ]:
1ozna_PU2_236-284
CI=2.28


Level 3
PU
Molecule needs Java 1.4 Structure


[1-44]:
1ozna_PU3_1-44
CI=3.57


[45-131]:
1ozna_PU3_45-131
CI=5.16


[132-188]:
1ozna_PU3_132-188
CI=5.20


[189-235]:
1ozna_PU3_189-235
CI=3.56


[236-284 ]:
1ozna_PU3_236-284
CI=2.28


Level 4
PU
Molecule needs Java 1.4 Structure


[1-44]:
1ozna_PU4_1-44
CI=3.57


[45-82]:
1ozna_PU4_45-82
CI=3.02


[83-131]:
1ozna_PU4_83-131
CI=3.94


[132-188]:
1ozna_PU4_132-188
CI=5.20


[189-235]:
1ozna_PU4_189-235
CI=3.56


[236-284 ]:
1ozna_PU4_236-284
CI=2.28


Level 5
PU
Molecule needs Java 1.4 Structure


[1-44]:
1ozna_PU5_1-44
CI=3.57


[45-82]:
1ozna_PU5_45-82
CI=3.02


[83-131]:
1ozna_PU5_83-131
CI=3.94


[132-188]:
1ozna_PU5_132-188
CI=5.20


[189-235]:
1ozna_PU5_189-235
CI=3.56


[236-258]:
1ozna_PU5_236-258
CI=0.08


[259-284 ]:
1ozna_PU5_259-284
CI=1.46


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ozna_PU6_1-17
CI=1.42


[18-44]:
1ozna_PU6_18-44
CI=2.03


[45-82]:
1ozna_PU6_45-82
CI=3.02


[83-131]:
1ozna_PU6_83-131
CI=3.94


[132-188]:
1ozna_PU6_132-188
CI=5.20


[189-235]:
1ozna_PU6_189-235
CI=3.56


[236-258]:
1ozna_PU6_236-258
CI=0.08


[259-284 ]:
1ozna_PU6_259-284
CI=1.46


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ozna_PU7_1-17
CI=1.42


[18-44]:
1ozna_PU7_18-44
CI=2.03


[45-82]:
1ozna_PU7_45-82
CI=3.02


[83-115]:
1ozna_PU7_83-115
CI=2.43


[116-131]:
1ozna_PU7_116-131
CI=0.00


[132-188]:
1ozna_PU7_132-188
CI=5.20


[189-235]:
1ozna_PU7_189-235
CI=3.56


[236-258]:
1ozna_PU7_236-258
CI=0.08


[259-284 ]:
1ozna_PU7_259-284
CI=1.46


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ozna_PU8_1-17
CI=1.42


[18-44]:
1ozna_PU8_18-44
CI=2.03


[45-82]:
1ozna_PU8_45-82
CI=3.02


[83-115]:
1ozna_PU8_83-115
CI=2.43


[116-131]:
1ozna_PU8_116-131
CI=0.00


[132-188]:
1ozna_PU8_132-188
CI=5.20


[189-206]:
1ozna_PU8_189-206
CI=0.00


[207-235]:
1ozna_PU8_207-235
CI=1.25


[236-258]:
1ozna_PU8_236-258
CI=0.08


[259-284 ]:
1ozna_PU8_259-284
CI=1.46


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1ozna_PU_1-17
CI=1.42


[18-44]:
1ozna_PU_18-44
CI=2.03


[45-82]:
1ozna_PU_45-82
CI=3.02


[83-115]:
1ozna_PU_83-115
CI=2.43


[116-131]:
1ozna_PU_116-131
CI=0.00


[132-164]:
1ozna_PU_132-164
CI=2.89


[165-188]:
1ozna_PU_165-188
CI=0.39


[189-206]:
1ozna_PU_189-206
CI=0.00


[207-235]:
1ozna_PU_207-235
CI=1.25


[236-258]:
1ozna_PU_236-258
CI=0.08


[259-284 ]:
1ozna_PU_259-284
CI=1.46