Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-182]:
1p4ca_PU0_1-182
CI=2.87


[183-202]:
1p4ca_PU0_183-202
CI=0.37


[203-353 ]:
1p4ca_PU0_203-353
CI=3.18


Level 1
PU
Molecule needs Java 1.4 Structure


[1-31]:
1p4ca_PU1_1-31
CI=0.24


[32-57]:
1p4ca_PU1_32-57
CI=0.00


[58-182]:
1p4ca_PU1_58-182
CI=3.54


[183-202]:
1p4ca_PU1_183-202
CI=0.37


[203-353 ]:
1p4ca_PU1_203-353
CI=3.18


Level 2
PU
Molecule needs Java 1.4 Structure


[1-31]:
1p4ca_PU2_1-31
CI=0.24


[32-57]:
1p4ca_PU2_32-57
CI=0.00


[58-182]:
1p4ca_PU2_58-182
CI=3.54


[183-202]:
1p4ca_PU2_183-202
CI=0.37


[203-282]:
1p4ca_PU2_203-282
CI=3.31


[283-353 ]:
1p4ca_PU2_283-353
CI=1.93


Level 3
PU
Molecule needs Java 1.4 Structure


[1-31]:
1p4ca_PU3_1-31
CI=0.24


[32-57]:
1p4ca_PU3_32-57
CI=0.00


[58-182]:
1p4ca_PU3_58-182
CI=3.54


[183-202]:
1p4ca_PU3_183-202
CI=0.37


[203-282]:
1p4ca_PU3_203-282
CI=3.31


[283-303]:
1p4ca_PU3_283-303
CI=1.05


[304-324]:
1p4ca_PU3_304-324
CI=1.41


[325-353 ]:
1p4ca_PU3_325-353
CI=0.39


Level 4
PU
Molecule needs Java 1.4 Structure


[1-31]:
1p4ca_PU4_1-31
CI=0.24


[32-57]:
1p4ca_PU4_32-57
CI=0.00


[58-182]:
1p4ca_PU4_58-182
CI=3.54


[183-202]:
1p4ca_PU4_183-202
CI=0.37


[203-222]:
1p4ca_PU4_203-222
CI=0.00


[223-282]:
1p4ca_PU4_223-282
CI=4.14


[283-303]:
1p4ca_PU4_283-303
CI=1.05


[304-324]:
1p4ca_PU4_304-324
CI=1.41


[325-353 ]:
1p4ca_PU4_325-353
CI=0.39


Level 5
PU
Molecule needs Java 1.4 Structure


[1-31]:
1p4ca_PU5_1-31
CI=0.24


[32-57]:
1p4ca_PU5_32-57
CI=0.00


[58-74]:
1p4ca_PU5_58-74
CI=1.73


[75-182]:
1p4ca_PU5_75-182
CI=3.42


[183-202]:
1p4ca_PU5_183-202
CI=0.37


[203-222]:
1p4ca_PU5_203-222
CI=0.00


[223-282]:
1p4ca_PU5_223-282
CI=4.14


[283-303]:
1p4ca_PU5_283-303
CI=1.05


[304-324]:
1p4ca_PU5_304-324
CI=1.41


[325-353 ]:
1p4ca_PU5_325-353
CI=0.39


Level 6
PU
Molecule needs Java 1.4 Structure


[1-31]:
1p4ca_PU6_1-31
CI=0.24


[32-57]:
1p4ca_PU6_32-57
CI=0.00


[58-74]:
1p4ca_PU6_58-74
CI=1.73


[75-154]:
1p4ca_PU6_75-154
CI=3.78


[155-182]:
1p4ca_PU6_155-182
CI=0.07


[183-202]:
1p4ca_PU6_183-202
CI=0.37


[203-222]:
1p4ca_PU6_203-222
CI=0.00


[223-282]:
1p4ca_PU6_223-282
CI=4.14


[283-303]:
1p4ca_PU6_283-303
CI=1.05


[304-324]:
1p4ca_PU6_304-324
CI=1.41


[325-353 ]:
1p4ca_PU6_325-353
CI=0.39


Level 7
PU
Molecule needs Java 1.4 Structure


[1-31]:
1p4ca_PU7_1-31
CI=0.24


[32-57]:
1p4ca_PU7_32-57
CI=0.00


[58-74]:
1p4ca_PU7_58-74
CI=1.73


[75-126]:
1p4ca_PU7_75-126
CI=3.72


[127-154]:
1p4ca_PU7_127-154
CI=0.87


[155-182]:
1p4ca_PU7_155-182
CI=0.07


[183-202]:
1p4ca_PU7_183-202
CI=0.37


[203-222]:
1p4ca_PU7_203-222
CI=0.00


[223-282]:
1p4ca_PU7_223-282
CI=4.14


[283-303]:
1p4ca_PU7_283-303
CI=1.05


[304-324]:
1p4ca_PU7_304-324
CI=1.41


[325-353 ]:
1p4ca_PU7_325-353
CI=0.39


Level 8
PU
Molecule needs Java 1.4 Structure


[1-31]:
1p4ca_PU8_1-31
CI=0.24


[32-57]:
1p4ca_PU8_32-57
CI=0.00


[58-74]:
1p4ca_PU8_58-74
CI=1.73


[75-126]:
1p4ca_PU8_75-126
CI=3.72


[127-154]:
1p4ca_PU8_127-154
CI=0.87


[155-182]:
1p4ca_PU8_155-182
CI=0.07


[183-202]:
1p4ca_PU8_183-202
CI=0.37


[203-222]:
1p4ca_PU8_203-222
CI=0.00


[223-249]:
1p4ca_PU8_223-249
CI=2.84


[250-282]:
1p4ca_PU8_250-282
CI=1.65


[283-303]:
1p4ca_PU8_283-303
CI=1.05


[304-324]:
1p4ca_PU8_304-324
CI=1.41


[325-353 ]:
1p4ca_PU8_325-353
CI=0.39


Level 9
PU
Molecule needs Java 1.4 Structure


[1-31]:
1p4ca_PU9_1-31
CI=0.24


[32-57]:
1p4ca_PU9_32-57
CI=0.00


[58-74]:
1p4ca_PU9_58-74
CI=1.73


[75-126]:
1p4ca_PU9_75-126
CI=3.72


[127-154]:
1p4ca_PU9_127-154
CI=0.87


[155-182]:
1p4ca_PU9_155-182
CI=0.07


[183-202]:
1p4ca_PU9_183-202
CI=0.37


[203-222]:
1p4ca_PU9_203-222
CI=0.00


[223-249]:
1p4ca_PU9_223-249
CI=2.84


[250-266]:
1p4ca_PU9_250-266
CI=0.96


[267-282]:
1p4ca_PU9_267-282
CI=0.56


[283-303]:
1p4ca_PU9_283-303
CI=1.05


[304-324]:
1p4ca_PU9_304-324
CI=1.41


[325-353 ]:
1p4ca_PU9_325-353
CI=0.39


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-31]:
1p4ca_PU_1-31
CI=0.24


[32-57]:
1p4ca_PU_32-57
CI=0.00


[58-74]:
1p4ca_PU_58-74
CI=1.73


[75-91]:
1p4ca_PU_75-91
CI=0.65


[92-126]:
1p4ca_PU_92-126
CI=2.87


[127-154]:
1p4ca_PU_127-154
CI=0.87


[155-182]:
1p4ca_PU_155-182
CI=0.07


[183-202]:
1p4ca_PU_183-202
CI=0.37


[203-222]:
1p4ca_PU_203-222
CI=0.00


[223-249]:
1p4ca_PU_223-249
CI=2.84


[250-266]:
1p4ca_PU_250-266
CI=0.96


[267-282]:
1p4ca_PU_267-282
CI=0.56


[283-303]:
1p4ca_PU_283-303
CI=1.05


[304-324]:
1p4ca_PU_304-324
CI=1.41


[325-353 ]:
1p4ca_PU_325-353
CI=0.39