Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-66]:
1p57a_PU0_1-66
CI=2.24


[67-92]:
1p57a_PU0_67-92
CI=2.32


[93-110 ]:
1p57a_PU0_93-110
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-27]:
1p57a_PU1_1-27
CI=2.39


[28-66]:
1p57a_PU1_28-66
CI=0.82


[67-92]:
1p57a_PU1_67-92
CI=2.32


[93-110 ]:
1p57a_PU1_93-110
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-27]:
1p57a_PU_1-27
CI=2.39


[28-47]:
1p57a_PU_28-47
CI=0.18


[48-66]:
1p57a_PU_48-66
CI=0.00


[67-92]:
1p57a_PU_67-92
CI=2.32


[93-110 ]:
1p57a_PU_93-110
CI=0.00