Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1psra_PU0_1-18
CI=0.00


[19-100 ]:
1psra_PU0_19-100
CI=1.75


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1psra_PU1_1-18
CI=0.00


[19-77]:
1psra_PU1_19-77
CI=1.71


[78-100 ]:
1psra_PU1_78-100
CI=0.64


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-18]:
1psra_PU_1-18
CI=0.00


[19-34]:
1psra_PU_19-34
CI=1.26


[35-55]:
1psra_PU_35-55
CI=0.61


[56-77]:
1psra_PU_56-77
CI=0.93


[78-100 ]:
1psra_PU_78-100
CI=0.64