Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-147]:
1ptma_PU0_1-147
CI=4.02


[148-271]:
1ptma_PU0_148-271
CI=2.95


[272-321 ]:
1ptma_PU0_272-321
CI=1.99


Level 1
PU
Molecule needs Java 1.4 Structure


[1-130]:
1ptma_PU1_1-130
CI=4.22


[131-147]:
1ptma_PU1_131-147
CI=0.84


[148-271]:
1ptma_PU1_148-271
CI=2.95


[272-321 ]:
1ptma_PU1_272-321
CI=1.99


Level 2
PU
Molecule needs Java 1.4 Structure


[1-130]:
1ptma_PU2_1-130
CI=4.22


[131-147]:
1ptma_PU2_131-147
CI=0.84


[148-199]:
1ptma_PU2_148-199
CI=1.18


[200-252]:
1ptma_PU2_200-252
CI=2.12


[253-271]:
1ptma_PU2_253-271
CI=0.19


[272-321 ]:
1ptma_PU2_272-321
CI=1.99


Level 3
PU
Molecule needs Java 1.4 Structure


[1-130]:
1ptma_PU3_1-130
CI=4.22


[131-147]:
1ptma_PU3_131-147
CI=0.84


[148-183]:
1ptma_PU3_148-183
CI=0.95


[184-199]:
1ptma_PU3_184-199
CI=1.26


[200-252]:
1ptma_PU3_200-252
CI=2.12


[253-271]:
1ptma_PU3_253-271
CI=0.19


[272-321 ]:
1ptma_PU3_272-321
CI=1.99


Level 4
PU
Molecule needs Java 1.4 Structure


[1-130]:
1ptma_PU4_1-130
CI=4.22


[131-147]:
1ptma_PU4_131-147
CI=0.84


[148-164]:
1ptma_PU4_148-164
CI=0.77


[165-183]:
1ptma_PU4_165-183
CI=0.00


[184-199]:
1ptma_PU4_184-199
CI=1.26


[200-252]:
1ptma_PU4_200-252
CI=2.12


[253-271]:
1ptma_PU4_253-271
CI=0.19


[272-321 ]:
1ptma_PU4_272-321
CI=1.99


Level 5
PU
Molecule needs Java 1.4 Structure


[1-24]:
1ptma_PU5_1-24
CI=0.78


[25-77]:
1ptma_PU5_25-77
CI=3.59


[78-130]:
1ptma_PU5_78-130
CI=1.22


[131-147]:
1ptma_PU5_131-147
CI=0.84


[148-164]:
1ptma_PU5_148-164
CI=0.77


[165-183]:
1ptma_PU5_165-183
CI=0.00


[184-199]:
1ptma_PU5_184-199
CI=1.26


[200-252]:
1ptma_PU5_200-252
CI=2.12


[253-271]:
1ptma_PU5_253-271
CI=0.19


[272-321 ]:
1ptma_PU5_272-321
CI=1.99


Level 6
PU
Molecule needs Java 1.4 Structure


[1-24]:
1ptma_PU6_1-24
CI=0.78


[25-77]:
1ptma_PU6_25-77
CI=3.59


[78-94]:
1ptma_PU6_78-94
CI=0.99


[95-130]:
1ptma_PU6_95-130
CI=0.62


[131-147]:
1ptma_PU6_131-147
CI=0.84


[148-164]:
1ptma_PU6_148-164
CI=0.77


[165-183]:
1ptma_PU6_165-183
CI=0.00


[184-199]:
1ptma_PU6_184-199
CI=1.26


[200-252]:
1ptma_PU6_200-252
CI=2.12


[253-271]:
1ptma_PU6_253-271
CI=0.19


[272-321 ]:
1ptma_PU6_272-321
CI=1.99


Level 7
PU
Molecule needs Java 1.4 Structure


[1-24]:
1ptma_PU7_1-24
CI=0.78


[25-77]:
1ptma_PU7_25-77
CI=3.59


[78-94]:
1ptma_PU7_78-94
CI=0.99


[95-112]:
1ptma_PU7_95-112
CI=0.31


[113-130]:
1ptma_PU7_113-130
CI=0.10


[131-147]:
1ptma_PU7_131-147
CI=0.84


[148-164]:
1ptma_PU7_148-164
CI=0.77


[165-183]:
1ptma_PU7_165-183
CI=0.00


[184-199]:
1ptma_PU7_184-199
CI=1.26


[200-252]:
1ptma_PU7_200-252
CI=2.12


[253-271]:
1ptma_PU7_253-271
CI=0.19


[272-321 ]:
1ptma_PU7_272-321
CI=1.99


Level 8
PU
Molecule needs Java 1.4 Structure


[1-24]:
1ptma_PU8_1-24
CI=0.78


[25-77]:
1ptma_PU8_25-77
CI=3.59


[78-94]:
1ptma_PU8_78-94
CI=0.99


[95-112]:
1ptma_PU8_95-112
CI=0.31


[113-130]:
1ptma_PU8_113-130
CI=0.10


[131-147]:
1ptma_PU8_131-147
CI=0.84


[148-164]:
1ptma_PU8_148-164
CI=0.77


[165-183]:
1ptma_PU8_165-183
CI=0.00


[184-199]:
1ptma_PU8_184-199
CI=1.26


[200-236]:
1ptma_PU8_200-236
CI=1.38


[237-252]:
1ptma_PU8_237-252
CI=0.11


[253-271]:
1ptma_PU8_253-271
CI=0.19


[272-321 ]:
1ptma_PU8_272-321
CI=1.99


Level 9
PU
Molecule needs Java 1.4 Structure


[1-24]:
1ptma_PU9_1-24
CI=0.78


[25-77]:
1ptma_PU9_25-77
CI=3.59


[78-94]:
1ptma_PU9_78-94
CI=0.99


[95-112]:
1ptma_PU9_95-112
CI=0.31


[113-130]:
1ptma_PU9_113-130
CI=0.10


[131-147]:
1ptma_PU9_131-147
CI=0.84


[148-164]:
1ptma_PU9_148-164
CI=0.77


[165-183]:
1ptma_PU9_165-183
CI=0.00


[184-199]:
1ptma_PU9_184-199
CI=1.26


[200-217]:
1ptma_PU9_200-217
CI=1.42


[218-236]:
1ptma_PU9_218-236
CI=0.20


[237-252]:
1ptma_PU9_237-252
CI=0.11


[253-271]:
1ptma_PU9_253-271
CI=0.19


[272-321 ]:
1ptma_PU9_272-321
CI=1.99


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-24]:
1ptma_PU_1-24
CI=0.78


[25-77]:
1ptma_PU_25-77
CI=3.59


[78-94]:
1ptma_PU_78-94
CI=0.99


[95-112]:
1ptma_PU_95-112
CI=0.31


[113-130]:
1ptma_PU_113-130
CI=0.10


[131-147]:
1ptma_PU_131-147
CI=0.84


[148-164]:
1ptma_PU_148-164
CI=0.77


[165-183]:
1ptma_PU_165-183
CI=0.00


[184-199]:
1ptma_PU_184-199
CI=1.26


[200-217]:
1ptma_PU_200-217
CI=1.42


[218-236]:
1ptma_PU_218-236
CI=0.20


[237-252]:
1ptma_PU_237-252
CI=0.11


[253-271]:
1ptma_PU_253-271
CI=0.19


[272-291]:
1ptma_PU_272-291
CI=2.14


[292-321 ]:
1ptma_PU_292-321
CI=0.12