Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-85]:
1puc0_PU0_1-85
CI=1.81


[86-101 ]:
1puc0_PU0_86-101
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-23]:
1puc0_PU1_1-23
CI=0.00


[24-41]:
1puc0_PU1_24-41
CI=2.09


[42-85]:
1puc0_PU1_42-85
CI=1.04


[86-101 ]:
1puc0_PU1_86-101
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-23]:
1puc0_PU_1-23
CI=0.00


[24-41]:
1puc0_PU_24-41
CI=2.09


[42-63]:
1puc0_PU_42-63
CI=0.61


[64-85]:
1puc0_PU_64-85
CI=1.26


[86-101 ]:
1puc0_PU_86-101
CI=0.00