Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-202]:
1pyfa_PU0_1-202
CI=4.13


[203-260]:
1pyfa_PU0_203-260
CI=1.60


[261-309 ]:
1pyfa_PU0_261-309
CI=0.81


Level 1
PU
Molecule needs Java 1.4 Structure


[1-202]:
1pyfa_PU1_1-202
CI=4.13


[203-260]:
1pyfa_PU1_203-260
CI=1.60


[261-293]:
1pyfa_PU1_261-293
CI=0.85


[294-309 ]:
1pyfa_PU1_294-309
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1pyfa_PU2_1-16
CI=1.98


[17-79]:
1pyfa_PU2_17-79
CI=3.37


[80-202]:
1pyfa_PU2_80-202
CI=3.55


[203-260]:
1pyfa_PU2_203-260
CI=1.60


[261-293]:
1pyfa_PU2_261-293
CI=0.85


[294-309 ]:
1pyfa_PU2_294-309
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1pyfa_PU3_1-16
CI=1.98


[17-79]:
1pyfa_PU3_17-79
CI=3.37


[80-170]:
1pyfa_PU3_80-170
CI=3.65


[171-202]:
1pyfa_PU3_171-202
CI=1.85


[203-260]:
1pyfa_PU3_203-260
CI=1.60


[261-293]:
1pyfa_PU3_261-293
CI=0.85


[294-309 ]:
1pyfa_PU3_294-309
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1pyfa_PU4_1-16
CI=1.98


[17-79]:
1pyfa_PU4_17-79
CI=3.37


[80-170]:
1pyfa_PU4_80-170
CI=3.65


[171-202]:
1pyfa_PU4_171-202
CI=1.85


[203-244]:
1pyfa_PU4_203-244
CI=1.03


[245-260]:
1pyfa_PU4_245-260
CI=1.03


[261-293]:
1pyfa_PU4_261-293
CI=0.85


[294-309 ]:
1pyfa_PU4_294-309
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1pyfa_PU5_1-16
CI=1.98


[17-79]:
1pyfa_PU5_17-79
CI=3.37


[80-101]:
1pyfa_PU5_80-101
CI=1.37


[102-117]:
1pyfa_PU5_102-117
CI=0.34


[118-170]:
1pyfa_PU5_118-170
CI=2.61


[171-202]:
1pyfa_PU5_171-202
CI=1.85


[203-244]:
1pyfa_PU5_203-244
CI=1.03


[245-260]:
1pyfa_PU5_245-260
CI=1.03


[261-293]:
1pyfa_PU5_261-293
CI=0.85


[294-309 ]:
1pyfa_PU5_294-309
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1pyfa_PU6_1-16
CI=1.98


[17-79]:
1pyfa_PU6_17-79
CI=3.37


[80-101]:
1pyfa_PU6_80-101
CI=1.37


[102-117]:
1pyfa_PU6_102-117
CI=0.34


[118-170]:
1pyfa_PU6_118-170
CI=2.61


[171-202]:
1pyfa_PU6_171-202
CI=1.85


[203-244]:
1pyfa_PU6_203-244
CI=1.03


[245-260]:
1pyfa_PU6_245-260
CI=1.03


[261-277]:
1pyfa_PU6_261-277
CI=0.64


[278-293]:
1pyfa_PU6_278-293
CI=0.00


[294-309 ]:
1pyfa_PU6_294-309
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1pyfa_PU7_1-16
CI=1.98


[17-79]:
1pyfa_PU7_17-79
CI=3.37


[80-101]:
1pyfa_PU7_80-101
CI=1.37


[102-117]:
1pyfa_PU7_102-117
CI=0.34


[118-170]:
1pyfa_PU7_118-170
CI=2.61


[171-202]:
1pyfa_PU7_171-202
CI=1.85


[203-227]:
1pyfa_PU7_203-227
CI=0.29


[228-244]:
1pyfa_PU7_228-244
CI=0.43


[245-260]:
1pyfa_PU7_245-260
CI=1.03


[261-277]:
1pyfa_PU7_261-277
CI=0.64


[278-293]:
1pyfa_PU7_278-293
CI=0.00


[294-309 ]:
1pyfa_PU7_294-309
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-16]:
1pyfa_PU_1-16
CI=1.98


[17-62]:
1pyfa_PU_17-62
CI=3.47


[63-79]:
1pyfa_PU_63-79
CI=0.00


[80-101]:
1pyfa_PU_80-101
CI=1.37


[102-117]:
1pyfa_PU_102-117
CI=0.34


[118-170]:
1pyfa_PU_118-170
CI=2.61


[171-202]:
1pyfa_PU_171-202
CI=1.85


[203-227]:
1pyfa_PU_203-227
CI=0.29


[228-244]:
1pyfa_PU_228-244
CI=0.43


[245-260]:
1pyfa_PU_245-260
CI=1.03


[261-277]:
1pyfa_PU_261-277
CI=0.64


[278-293]:
1pyfa_PU_278-293
CI=0.00


[294-309 ]:
1pyfa_PU_294-309
CI=0.00