Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-26]:
1pz7a_PU0_1-26
CI=0.44


[27-159]:
1pz7a_PU0_27-159
CI=5.82


[160-188 ]:
1pz7a_PU0_160-188
CI=0.47


Level 1
PU
Molecule needs Java 1.4 Structure


[1-26]:
1pz7a_PU1_1-26
CI=0.44


[27-72]:
1pz7a_PU1_27-72
CI=1.96


[73-130]:
1pz7a_PU1_73-130
CI=4.32


[131-159]:
1pz7a_PU1_131-159
CI=0.85


[160-188 ]:
1pz7a_PU1_160-188
CI=0.47


Level 2
PU
Molecule needs Java 1.4 Structure


[1-26]:
1pz7a_PU2_1-26
CI=0.44


[27-44]:
1pz7a_PU2_27-44
CI=0.00


[45-72]:
1pz7a_PU2_45-72
CI=3.04


[73-130]:
1pz7a_PU2_73-130
CI=4.32


[131-159]:
1pz7a_PU2_131-159
CI=0.85


[160-188 ]:
1pz7a_PU2_160-188
CI=0.47


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-26]:
1pz7a_PU_1-26
CI=0.44


[27-44]:
1pz7a_PU_27-44
CI=0.00


[45-72]:
1pz7a_PU_45-72
CI=3.04


[73-98]:
1pz7a_PU_73-98
CI=2.04


[99-130]:
1pz7a_PU_99-130
CI=3.16


[131-159]:
1pz7a_PU_131-159
CI=0.85


[160-188 ]:
1pz7a_PU_160-188
CI=0.47