Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-191]:
1q2wa_PU0_1-191
CI=5.36


[192-295 ]:
1q2wa_PU0_192-295
CI=2.57


Level 1
PU
Molecule needs Java 1.4 Structure


[1-93]:
1q2wa_PU1_1-93
CI=3.80


[94-191]:
1q2wa_PU1_94-191
CI=4.76


[192-295 ]:
1q2wa_PU1_192-295
CI=2.57


Level 2
PU
Molecule needs Java 1.4 Structure


[1-93]:
1q2wa_PU2_1-93
CI=3.80


[94-191]:
1q2wa_PU2_94-191
CI=4.76


[192-212]:
1q2wa_PU2_192-212
CI=0.09


[213-269]:
1q2wa_PU2_213-269
CI=1.71


[270-295 ]:
1q2wa_PU2_270-295
CI=0.35


Level 3
PU
Molecule needs Java 1.4 Structure


[1-93]:
1q2wa_PU3_1-93
CI=3.80


[94-191]:
1q2wa_PU3_94-191
CI=4.76


[192-212]:
1q2wa_PU3_192-212
CI=0.09


[213-228]:
1q2wa_PU3_213-228
CI=0.00


[229-255]:
1q2wa_PU3_229-255
CI=0.62


[256-269]:
1q2wa_PU3_256-269
CI=0.00


[270-295 ]:
1q2wa_PU3_270-295
CI=0.35


Level 4
PU
Molecule needs Java 1.4 Structure


[1-42]:
1q2wa_PU4_1-42
CI=2.46


[43-59]:
1q2wa_PU4_43-59
CI=0.00


[60-93]:
1q2wa_PU4_60-93
CI=2.08


[94-191]:
1q2wa_PU4_94-191
CI=4.76


[192-212]:
1q2wa_PU4_192-212
CI=0.09


[213-228]:
1q2wa_PU4_213-228
CI=0.00


[229-255]:
1q2wa_PU4_229-255
CI=0.62


[256-269]:
1q2wa_PU4_256-269
CI=0.00


[270-295 ]:
1q2wa_PU4_270-295
CI=0.35


Level 5
PU
Molecule needs Java 1.4 Structure


[1-42]:
1q2wa_PU5_1-42
CI=2.46


[43-59]:
1q2wa_PU5_43-59
CI=0.00


[60-93]:
1q2wa_PU5_60-93
CI=2.08


[94-157]:
1q2wa_PU5_94-157
CI=4.31


[158-191]:
1q2wa_PU5_158-191
CI=1.94


[192-212]:
1q2wa_PU5_192-212
CI=0.09


[213-228]:
1q2wa_PU5_213-228
CI=0.00


[229-255]:
1q2wa_PU5_229-255
CI=0.62


[256-269]:
1q2wa_PU5_256-269
CI=0.00


[270-295 ]:
1q2wa_PU5_270-295
CI=0.35


Level 6
PU
Molecule needs Java 1.4 Structure


[1-19]:
1q2wa_PU6_1-19
CI=0.00


[20-42]:
1q2wa_PU6_20-42
CI=1.96


[43-59]:
1q2wa_PU6_43-59
CI=0.00


[60-93]:
1q2wa_PU6_60-93
CI=2.08


[94-157]:
1q2wa_PU6_94-157
CI=4.31


[158-191]:
1q2wa_PU6_158-191
CI=1.94


[192-212]:
1q2wa_PU6_192-212
CI=0.09


[213-228]:
1q2wa_PU6_213-228
CI=0.00


[229-255]:
1q2wa_PU6_229-255
CI=0.62


[256-269]:
1q2wa_PU6_256-269
CI=0.00


[270-295 ]:
1q2wa_PU6_270-295
CI=0.35


Level 7
PU
Molecule needs Java 1.4 Structure


[1-19]:
1q2wa_PU7_1-19
CI=0.00


[20-42]:
1q2wa_PU7_20-42
CI=1.96


[43-59]:
1q2wa_PU7_43-59
CI=0.00


[60-93]:
1q2wa_PU7_60-93
CI=2.08


[94-157]:
1q2wa_PU7_94-157
CI=4.31


[158-175]:
1q2wa_PU7_158-175
CI=1.44


[176-191]:
1q2wa_PU7_176-191
CI=0.11


[192-212]:
1q2wa_PU7_192-212
CI=0.09


[213-228]:
1q2wa_PU7_213-228
CI=0.00


[229-255]:
1q2wa_PU7_229-255
CI=0.62


[256-269]:
1q2wa_PU7_256-269
CI=0.00


[270-295 ]:
1q2wa_PU7_270-295
CI=0.35


Level 8
PU
Molecule needs Java 1.4 Structure


[1-19]:
1q2wa_PU8_1-19
CI=0.00


[20-42]:
1q2wa_PU8_20-42
CI=1.96


[43-59]:
1q2wa_PU8_43-59
CI=0.00


[60-93]:
1q2wa_PU8_60-93
CI=2.08


[94-138]:
1q2wa_PU8_94-138
CI=2.98


[139-157]:
1q2wa_PU8_139-157
CI=2.57


[158-175]:
1q2wa_PU8_158-175
CI=1.44


[176-191]:
1q2wa_PU8_176-191
CI=0.11


[192-212]:
1q2wa_PU8_192-212
CI=0.09


[213-228]:
1q2wa_PU8_213-228
CI=0.00


[229-255]:
1q2wa_PU8_229-255
CI=0.62


[256-269]:
1q2wa_PU8_256-269
CI=0.00


[270-295 ]:
1q2wa_PU8_270-295
CI=0.35


Level 9
PU
Molecule needs Java 1.4 Structure


[1-19]:
1q2wa_PU9_1-19
CI=0.00


[20-42]:
1q2wa_PU9_20-42
CI=1.96


[43-59]:
1q2wa_PU9_43-59
CI=0.00


[60-77]:
1q2wa_PU9_60-77
CI=1.03


[78-93]:
1q2wa_PU9_78-93
CI=0.00


[94-138]:
1q2wa_PU9_94-138
CI=2.98


[139-157]:
1q2wa_PU9_139-157
CI=2.57


[158-175]:
1q2wa_PU9_158-175
CI=1.44


[176-191]:
1q2wa_PU9_176-191
CI=0.11


[192-212]:
1q2wa_PU9_192-212
CI=0.09


[213-228]:
1q2wa_PU9_213-228
CI=0.00


[229-255]:
1q2wa_PU9_229-255
CI=0.62


[256-269]:
1q2wa_PU9_256-269
CI=0.00


[270-295 ]:
1q2wa_PU9_270-295
CI=0.35


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-19]:
1q2wa_PU_1-19
CI=0.00


[20-42]:
1q2wa_PU_20-42
CI=1.96


[43-59]:
1q2wa_PU_43-59
CI=0.00


[60-77]:
1q2wa_PU_60-77
CI=1.03


[78-93]:
1q2wa_PU_78-93
CI=0.00


[94-112]:
1q2wa_PU_94-112
CI=0.00


[113-138]:
1q2wa_PU_113-138
CI=0.85


[139-157]:
1q2wa_PU_139-157
CI=2.57


[158-175]:
1q2wa_PU_158-175
CI=1.44


[176-191]:
1q2wa_PU_176-191
CI=0.11


[192-212]:
1q2wa_PU_192-212
CI=0.09


[213-228]:
1q2wa_PU_213-228
CI=0.00


[229-255]:
1q2wa_PU_229-255
CI=0.62


[256-269]:
1q2wa_PU_256-269
CI=0.00


[270-295 ]:
1q2wa_PU_270-295
CI=0.35