Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-48]:
1q8ra_PU0_1-48
CI=1.50


[49-118 ]:
1q8ra_PU0_49-118
CI=3.82


Level 1
PU
Molecule needs Java 1.4 Structure


[1-48]:
1q8ra_PU1_1-48
CI=1.50


[49-74]:
1q8ra_PU1_49-74
CI=0.21


[75-92]:
1q8ra_PU1_75-92
CI=0.92


[93-118 ]:
1q8ra_PU1_93-118
CI=0.07


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-32]:
1q8ra_PU_1-32
CI=1.42


[33-48]:
1q8ra_PU_33-48
CI=0.12


[49-74]:
1q8ra_PU_49-74
CI=0.21


[75-92]:
1q8ra_PU_75-92
CI=0.92


[93-118 ]:
1q8ra_PU_93-118
CI=0.07