Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-60]:
1qaza_PU0_1-60
CI=0.00


[61-82]:
1qaza_PU0_61-82
CI=1.97


[83-351 ]:
1qaza_PU0_83-351
CI=3.38


Level 1
PU
Molecule needs Java 1.4 Structure


[1-41]:
1qaza_PU1_1-41
CI=0.00


[42-60]:
1qaza_PU1_42-60
CI=0.00


[61-82]:
1qaza_PU1_61-82
CI=1.97


[83-351 ]:
1qaza_PU1_83-351
CI=3.38


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qaza_PU2_1-17
CI=0.00


[18-41]:
1qaza_PU2_18-41
CI=0.00


[42-60]:
1qaza_PU2_42-60
CI=0.00


[61-82]:
1qaza_PU2_61-82
CI=1.97


[83-351 ]:
1qaza_PU2_83-351
CI=3.38


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qaza_PU3_1-17
CI=0.00


[18-41]:
1qaza_PU3_18-41
CI=0.00


[42-60]:
1qaza_PU3_42-60
CI=0.00


[61-82]:
1qaza_PU3_61-82
CI=1.97


[83-216]:
1qaza_PU3_83-216
CI=2.55


[217-351 ]:
1qaza_PU3_217-351
CI=2.92


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qaza_PU4_1-17
CI=0.00


[18-41]:
1qaza_PU4_18-41
CI=0.00


[42-60]:
1qaza_PU4_42-60
CI=0.00


[61-82]:
1qaza_PU4_61-82
CI=1.97


[83-216]:
1qaza_PU4_83-216
CI=2.55


[217-302]:
1qaza_PU4_217-302
CI=2.47


[303-351 ]:
1qaza_PU4_303-351
CI=2.65


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qaza_PU5_1-17
CI=0.00


[18-41]:
1qaza_PU5_18-41
CI=0.00


[42-60]:
1qaza_PU5_42-60
CI=0.00


[61-82]:
1qaza_PU5_61-82
CI=1.97


[83-216]:
1qaza_PU5_83-216
CI=2.55


[217-248]:
1qaza_PU5_217-248
CI=1.18


[249-267]:
1qaza_PU5_249-267
CI=0.86


[268-302]:
1qaza_PU5_268-302
CI=0.43


[303-351 ]:
1qaza_PU5_303-351
CI=2.65


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qaza_PU6_1-17
CI=0.00


[18-41]:
1qaza_PU6_18-41
CI=0.00


[42-60]:
1qaza_PU6_42-60
CI=0.00


[61-82]:
1qaza_PU6_61-82
CI=1.97


[83-216]:
1qaza_PU6_83-216
CI=2.55


[217-248]:
1qaza_PU6_217-248
CI=1.18


[249-267]:
1qaza_PU6_249-267
CI=0.86


[268-284]:
1qaza_PU6_268-284
CI=0.32


[285-302]:
1qaza_PU6_285-302
CI=0.41


[303-351 ]:
1qaza_PU6_303-351
CI=2.65


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1qaza_PU7_1-17
CI=0.00


[18-41]:
1qaza_PU7_18-41
CI=0.00


[42-60]:
1qaza_PU7_42-60
CI=0.00


[61-82]:
1qaza_PU7_61-82
CI=1.97


[83-168]:
1qaza_PU7_83-168
CI=1.76


[169-216]:
1qaza_PU7_169-216
CI=2.14


[217-248]:
1qaza_PU7_217-248
CI=1.18


[249-267]:
1qaza_PU7_249-267
CI=0.86


[268-284]:
1qaza_PU7_268-284
CI=0.32


[285-302]:
1qaza_PU7_285-302
CI=0.41


[303-351 ]:
1qaza_PU7_303-351
CI=2.65


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1qaza_PU_1-17
CI=0.00


[18-41]:
1qaza_PU_18-41
CI=0.00


[42-60]:
1qaza_PU_42-60
CI=0.00


[61-82]:
1qaza_PU_61-82
CI=1.97


[83-121]:
1qaza_PU_83-121
CI=0.64


[122-137]:
1qaza_PU_122-137
CI=1.02


[138-168]:
1qaza_PU_138-168
CI=0.30


[169-216]:
1qaza_PU_169-216
CI=2.14


[217-248]:
1qaza_PU_217-248
CI=1.18


[249-267]:
1qaza_PU_249-267
CI=0.86


[268-284]:
1qaza_PU_268-284
CI=0.32


[285-302]:
1qaza_PU_285-302
CI=0.41


[303-351 ]:
1qaza_PU_303-351
CI=2.65