Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-34]:
1qfoa_PU0_1-34
CI=1.67


[35-68]:
1qfoa_PU0_35-68
CI=2.64


[69-115 ]:
1qfoa_PU0_69-115
CI=2.40


Level 1
PU
Molecule needs Java 1.4 Structure


[1-34]:
1qfoa_PU1_1-34
CI=1.67


[35-68]:
1qfoa_PU1_35-68
CI=2.64


[69-85]:
1qfoa_PU1_69-85
CI=1.10


[86-115 ]:
1qfoa_PU1_86-115
CI=2.66


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-34]:
1qfoa_PU_1-34
CI=1.67


[35-51]:
1qfoa_PU_35-51
CI=2.31


[52-68]:
1qfoa_PU_52-68
CI=0.10


[69-85]:
1qfoa_PU_69-85
CI=1.10


[86-115 ]:
1qfoa_PU_86-115
CI=2.66