Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-47]:
1qgwa_PU0_1-47
CI=2.13


[48-75 ]:
1qgwa_PU0_48-75
CI=0.20


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-21]:
1qgwa_PU_1-21
CI=0.00


[22-47]:
1qgwa_PU_22-47
CI=0.28


[48-75 ]:
1qgwa_PU_48-75
CI=0.20