Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-125]:
1qj4a_PU0_1-125
CI=3.68


[126-175]:
1qj4a_PU0_126-175
CI=2.27


[176-256 ]:
1qj4a_PU0_176-256
CI=1.80


Level 1
PU
Molecule needs Java 1.4 Structure


[1-125]:
1qj4a_PU1_1-125
CI=3.68


[126-175]:
1qj4a_PU1_126-175
CI=2.27


[176-196]:
1qj4a_PU1_176-196
CI=0.08


[197-256 ]:
1qj4a_PU1_197-256
CI=2.39


Level 2
PU
Molecule needs Java 1.4 Structure


[1-106]:
1qj4a_PU2_1-106
CI=4.13


[107-125]:
1qj4a_PU2_107-125
CI=0.39


[126-175]:
1qj4a_PU2_126-175
CI=2.27


[176-196]:
1qj4a_PU2_176-196
CI=0.08


[197-256 ]:
1qj4a_PU2_197-256
CI=2.39


Level 3
PU
Molecule needs Java 1.4 Structure


[1-106]:
1qj4a_PU3_1-106
CI=4.13


[107-125]:
1qj4a_PU3_107-125
CI=0.39


[126-175]:
1qj4a_PU3_126-175
CI=2.27


[176-196]:
1qj4a_PU3_176-196
CI=0.08


[197-234]:
1qj4a_PU3_197-234
CI=2.71


[235-256 ]:
1qj4a_PU3_235-256
CI=0.33


Level 4
PU
Molecule needs Java 1.4 Structure


[1-50]:
1qj4a_PU4_1-50
CI=2.98


[51-106]:
1qj4a_PU4_51-106
CI=2.95


[107-125]:
1qj4a_PU4_107-125
CI=0.39


[126-175]:
1qj4a_PU4_126-175
CI=2.27


[176-196]:
1qj4a_PU4_176-196
CI=0.08


[197-234]:
1qj4a_PU4_197-234
CI=2.71


[235-256 ]:
1qj4a_PU4_235-256
CI=0.33


Level 5
PU
Molecule needs Java 1.4 Structure


[1-50]:
1qj4a_PU5_1-50
CI=2.98


[51-71]:
1qj4a_PU5_51-71
CI=0.00


[72-106]:
1qj4a_PU5_72-106
CI=3.71


[107-125]:
1qj4a_PU5_107-125
CI=0.39


[126-175]:
1qj4a_PU5_126-175
CI=2.27


[176-196]:
1qj4a_PU5_176-196
CI=0.08


[197-234]:
1qj4a_PU5_197-234
CI=2.71


[235-256 ]:
1qj4a_PU5_235-256
CI=0.33


Level 6
PU
Molecule needs Java 1.4 Structure


[1-50]:
1qj4a_PU6_1-50
CI=2.98


[51-71]:
1qj4a_PU6_51-71
CI=0.00


[72-106]:
1qj4a_PU6_72-106
CI=3.71


[107-125]:
1qj4a_PU6_107-125
CI=0.39


[126-145]:
1qj4a_PU6_126-145
CI=1.70


[146-175]:
1qj4a_PU6_146-175
CI=0.87


[176-196]:
1qj4a_PU6_176-196
CI=0.08


[197-234]:
1qj4a_PU6_197-234
CI=2.71


[235-256 ]:
1qj4a_PU6_235-256
CI=0.33


Level 7
PU
Molecule needs Java 1.4 Structure


[1-34]:
1qj4a_PU7_1-34
CI=2.18


[35-50]:
1qj4a_PU7_35-50
CI=1.14


[51-71]:
1qj4a_PU7_51-71
CI=0.00


[72-106]:
1qj4a_PU7_72-106
CI=3.71


[107-125]:
1qj4a_PU7_107-125
CI=0.39


[126-145]:
1qj4a_PU7_126-145
CI=1.70


[146-175]:
1qj4a_PU7_146-175
CI=0.87


[176-196]:
1qj4a_PU7_176-196
CI=0.08


[197-234]:
1qj4a_PU7_197-234
CI=2.71


[235-256 ]:
1qj4a_PU7_235-256
CI=0.33


Level 8
PU
Molecule needs Java 1.4 Structure


[1-18]:
1qj4a_PU8_1-18
CI=0.82


[19-34]:
1qj4a_PU8_19-34
CI=0.46


[35-50]:
1qj4a_PU8_35-50
CI=1.14


[51-71]:
1qj4a_PU8_51-71
CI=0.00


[72-106]:
1qj4a_PU8_72-106
CI=3.71


[107-125]:
1qj4a_PU8_107-125
CI=0.39


[126-145]:
1qj4a_PU8_126-145
CI=1.70


[146-175]:
1qj4a_PU8_146-175
CI=0.87


[176-196]:
1qj4a_PU8_176-196
CI=0.08


[197-234]:
1qj4a_PU8_197-234
CI=2.71


[235-256 ]:
1qj4a_PU8_235-256
CI=0.33


Level 9
PU
Molecule needs Java 1.4 Structure


[1-18]:
1qj4a_PU9_1-18
CI=0.82


[19-34]:
1qj4a_PU9_19-34
CI=0.46


[35-50]:
1qj4a_PU9_35-50
CI=1.14


[51-71]:
1qj4a_PU9_51-71
CI=0.00


[72-106]:
1qj4a_PU9_72-106
CI=3.71


[107-125]:
1qj4a_PU9_107-125
CI=0.39


[126-145]:
1qj4a_PU9_126-145
CI=1.70


[146-175]:
1qj4a_PU9_146-175
CI=0.87


[176-196]:
1qj4a_PU9_176-196
CI=0.08


[197-217]:
1qj4a_PU9_197-217
CI=0.35


[218-234]:
1qj4a_PU9_218-234
CI=0.00


[235-256 ]:
1qj4a_PU9_235-256
CI=0.33


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-18]:
1qj4a_PU_1-18
CI=0.82


[19-34]:
1qj4a_PU_19-34
CI=0.46


[35-50]:
1qj4a_PU_35-50
CI=1.14


[51-71]:
1qj4a_PU_51-71
CI=0.00


[72-88]:
1qj4a_PU_72-88
CI=0.66


[89-106]:
1qj4a_PU_89-106
CI=0.20


[107-125]:
1qj4a_PU_107-125
CI=0.39


[126-145]:
1qj4a_PU_126-145
CI=1.70


[146-175]:
1qj4a_PU_146-175
CI=0.87


[176-196]:
1qj4a_PU_176-196
CI=0.08


[197-217]:
1qj4a_PU_197-217
CI=0.35


[218-234]:
1qj4a_PU_218-234
CI=0.00


[235-256 ]:
1qj4a_PU_235-256
CI=0.33