Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-31]:
1qtwa_PU0_1-31
CI=2.80


[32-178]:
1qtwa_PU0_32-178
CI=3.59


[179-285 ]:
1qtwa_PU0_179-285
CI=3.47


Level 1
PU
Molecule needs Java 1.4 Structure


[1-31]:
1qtwa_PU1_1-31
CI=2.80


[32-47]:
1qtwa_PU1_32-47
CI=0.12


[48-66]:
1qtwa_PU1_48-66
CI=0.29


[67-178]:
1qtwa_PU1_67-178
CI=3.69


[179-285 ]:
1qtwa_PU1_179-285
CI=3.47


Level 2
PU
Molecule needs Java 1.4 Structure


[1-31]:
1qtwa_PU2_1-31
CI=2.80


[32-47]:
1qtwa_PU2_32-47
CI=0.12


[48-66]:
1qtwa_PU2_48-66
CI=0.29


[67-178]:
1qtwa_PU2_67-178
CI=3.69


[179-240]:
1qtwa_PU2_179-240
CI=3.35


[241-285 ]:
1qtwa_PU2_241-285
CI=1.13


Level 3
PU
Molecule needs Java 1.4 Structure


[1-31]:
1qtwa_PU3_1-31
CI=2.80


[32-47]:
1qtwa_PU3_32-47
CI=0.12


[48-66]:
1qtwa_PU3_48-66
CI=0.29


[67-178]:
1qtwa_PU3_67-178
CI=3.69


[179-199]:
1qtwa_PU3_179-199
CI=1.06


[200-216]:
1qtwa_PU3_200-216
CI=0.21


[217-240]:
1qtwa_PU3_217-240
CI=3.06


[241-285 ]:
1qtwa_PU3_241-285
CI=1.13


Level 4
PU
Molecule needs Java 1.4 Structure


[1-31]:
1qtwa_PU4_1-31
CI=2.80


[32-47]:
1qtwa_PU4_32-47
CI=0.12


[48-66]:
1qtwa_PU4_48-66
CI=0.29


[67-108]:
1qtwa_PU4_67-108
CI=1.77


[109-178]:
1qtwa_PU4_109-178
CI=2.70


[179-199]:
1qtwa_PU4_179-199
CI=1.06


[200-216]:
1qtwa_PU4_200-216
CI=0.21


[217-240]:
1qtwa_PU4_217-240
CI=3.06


[241-285 ]:
1qtwa_PU4_241-285
CI=1.13


Level 5
PU
Molecule needs Java 1.4 Structure


[1-31]:
1qtwa_PU5_1-31
CI=2.80


[32-47]:
1qtwa_PU5_32-47
CI=0.12


[48-66]:
1qtwa_PU5_48-66
CI=0.29


[67-91]:
1qtwa_PU5_67-91
CI=1.27


[92-108]:
1qtwa_PU5_92-108
CI=0.42


[109-178]:
1qtwa_PU5_109-178
CI=2.70


[179-199]:
1qtwa_PU5_179-199
CI=1.06


[200-216]:
1qtwa_PU5_200-216
CI=0.21


[217-240]:
1qtwa_PU5_217-240
CI=3.06


[241-285 ]:
1qtwa_PU5_241-285
CI=1.13


Level 6
PU
Molecule needs Java 1.4 Structure


[1-31]:
1qtwa_PU6_1-31
CI=2.80


[32-47]:
1qtwa_PU6_32-47
CI=0.12


[48-66]:
1qtwa_PU6_48-66
CI=0.29


[67-91]:
1qtwa_PU6_67-91
CI=1.27


[92-108]:
1qtwa_PU6_92-108
CI=0.42


[109-178]:
1qtwa_PU6_109-178
CI=2.70


[179-199]:
1qtwa_PU6_179-199
CI=1.06


[200-216]:
1qtwa_PU6_200-216
CI=0.21


[217-240]:
1qtwa_PU6_217-240
CI=3.06


[241-259]:
1qtwa_PU6_241-259
CI=0.10


[260-285 ]:
1qtwa_PU6_260-285
CI=0.14


Level 7
PU
Molecule needs Java 1.4 Structure


[1-31]:
1qtwa_PU7_1-31
CI=2.80


[32-47]:
1qtwa_PU7_32-47
CI=0.12


[48-66]:
1qtwa_PU7_48-66
CI=0.29


[67-91]:
1qtwa_PU7_67-91
CI=1.27


[92-108]:
1qtwa_PU7_92-108
CI=0.42


[109-139]:
1qtwa_PU7_109-139
CI=0.37


[140-178]:
1qtwa_PU7_140-178
CI=2.36


[179-199]:
1qtwa_PU7_179-199
CI=1.06


[200-216]:
1qtwa_PU7_200-216
CI=0.21


[217-240]:
1qtwa_PU7_217-240
CI=3.06


[241-259]:
1qtwa_PU7_241-259
CI=0.10


[260-285 ]:
1qtwa_PU7_260-285
CI=0.14


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-31]:
1qtwa_PU_1-31
CI=2.80


[32-47]:
1qtwa_PU_32-47
CI=0.12


[48-66]:
1qtwa_PU_48-66
CI=0.29


[67-91]:
1qtwa_PU_67-91
CI=1.27


[92-108]:
1qtwa_PU_92-108
CI=0.42


[109-139]:
1qtwa_PU_109-139
CI=0.37


[140-161]:
1qtwa_PU_140-161
CI=1.45


[162-178]:
1qtwa_PU_162-178
CI=0.43


[179-199]:
1qtwa_PU_179-199
CI=1.06


[200-216]:
1qtwa_PU_200-216
CI=0.21


[217-240]:
1qtwa_PU_217-240
CI=3.06


[241-259]:
1qtwa_PU_241-259
CI=0.10


[260-285 ]:
1qtwa_PU_260-285
CI=0.14