Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-89]:
1qwra_PU0_1-89
CI=4.00


[90-224]:
1qwra_PU0_90-224
CI=4.62


[225-312 ]:
1qwra_PU0_225-312
CI=5.22


Level 1
PU
Molecule needs Java 1.4 Structure


[1-40]:
1qwra_PU1_1-40
CI=2.82


[41-79]:
1qwra_PU1_41-79
CI=1.90


[80-89]:
1qwra_PU1_80-89
CI=0.00


[90-224]:
1qwra_PU1_90-224
CI=4.62


[225-312 ]:
1qwra_PU1_225-312
CI=5.22


Level 2
PU
Molecule needs Java 1.4 Structure


[1-40]:
1qwra_PU2_1-40
CI=2.82


[41-79]:
1qwra_PU2_41-79
CI=1.90


[80-89]:
1qwra_PU2_80-89
CI=0.00


[90-224]:
1qwra_PU2_90-224
CI=4.62


[225-252]:
1qwra_PU2_225-252
CI=3.12


[253-312 ]:
1qwra_PU2_253-312
CI=4.78


Level 3
PU
Molecule needs Java 1.4 Structure


[1-40]:
1qwra_PU3_1-40
CI=2.82


[41-79]:
1qwra_PU3_41-79
CI=1.90


[80-89]:
1qwra_PU3_80-89
CI=0.00


[90-113]:
1qwra_PU3_90-113
CI=1.65


[114-184]:
1qwra_PU3_114-184
CI=4.01


[185-224]:
1qwra_PU3_185-224
CI=1.24


[225-252]:
1qwra_PU3_225-252
CI=3.12


[253-312 ]:
1qwra_PU3_253-312
CI=4.78


Level 4
PU
Molecule needs Java 1.4 Structure


[1-40]:
1qwra_PU4_1-40
CI=2.82


[41-79]:
1qwra_PU4_41-79
CI=1.90


[80-89]:
1qwra_PU4_80-89
CI=0.00


[90-113]:
1qwra_PU4_90-113
CI=1.65


[114-132]:
1qwra_PU4_114-132
CI=0.00


[133-156]:
1qwra_PU4_133-156
CI=0.78


[157-184]:
1qwra_PU4_157-184
CI=0.07


[185-224]:
1qwra_PU4_185-224
CI=1.24


[225-252]:
1qwra_PU4_225-252
CI=3.12


[253-312 ]:
1qwra_PU4_253-312
CI=4.78


Level 5
PU
Molecule needs Java 1.4 Structure


[1-40]:
1qwra_PU5_1-40
CI=2.82


[41-79]:
1qwra_PU5_41-79
CI=1.90


[80-89]:
1qwra_PU5_80-89
CI=0.00


[90-113]:
1qwra_PU5_90-113
CI=1.65


[114-132]:
1qwra_PU5_114-132
CI=0.00


[133-156]:
1qwra_PU5_133-156
CI=0.78


[157-184]:
1qwra_PU5_157-184
CI=0.07


[185-208]:
1qwra_PU5_185-208
CI=1.40


[209-224]:
1qwra_PU5_209-224
CI=0.00


[225-252]:
1qwra_PU5_225-252
CI=3.12


[253-312 ]:
1qwra_PU5_253-312
CI=4.78


Level 6
PU
Molecule needs Java 1.4 Structure


[1-40]:
1qwra_PU6_1-40
CI=2.82


[41-57]:
1qwra_PU6_41-57
CI=0.88


[58-79]:
1qwra_PU6_58-79
CI=0.75


[80-89]:
1qwra_PU6_80-89
CI=0.00


[90-113]:
1qwra_PU6_90-113
CI=1.65


[114-132]:
1qwra_PU6_114-132
CI=0.00


[133-156]:
1qwra_PU6_133-156
CI=0.78


[157-184]:
1qwra_PU6_157-184
CI=0.07


[185-208]:
1qwra_PU6_185-208
CI=1.40


[209-224]:
1qwra_PU6_209-224
CI=0.00


[225-252]:
1qwra_PU6_225-252
CI=3.12


[253-312 ]:
1qwra_PU6_253-312
CI=4.78


Level 7
PU
Molecule needs Java 1.4 Structure


[1-40]:
1qwra_PU7_1-40
CI=2.82


[41-57]:
1qwra_PU7_41-57
CI=0.88


[58-79]:
1qwra_PU7_58-79
CI=0.75


[80-89]:
1qwra_PU7_80-89
CI=0.00


[90-113]:
1qwra_PU7_90-113
CI=1.65


[114-132]:
1qwra_PU7_114-132
CI=0.00


[133-156]:
1qwra_PU7_133-156
CI=0.78


[157-184]:
1qwra_PU7_157-184
CI=0.07


[185-208]:
1qwra_PU7_185-208
CI=1.40


[209-224]:
1qwra_PU7_209-224
CI=0.00


[225-252]:
1qwra_PU7_225-252
CI=3.12


[253-268]:
1qwra_PU7_253-268
CI=0.00


[269-290]:
1qwra_PU7_269-290
CI=2.58


[291-312 ]:
1qwra_PU7_291-312
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-17]:
1qwra_PU_1-17
CI=0.00


[18-40]:
1qwra_PU_18-40
CI=1.38


[41-57]:
1qwra_PU_41-57
CI=0.88


[58-79]:
1qwra_PU_58-79
CI=0.75


[80-89]:
1qwra_PU_80-89
CI=0.00


[90-113]:
1qwra_PU_90-113
CI=1.65


[114-132]:
1qwra_PU_114-132
CI=0.00


[133-156]:
1qwra_PU_133-156
CI=0.78


[157-184]:
1qwra_PU_157-184
CI=0.07


[185-208]:
1qwra_PU_185-208
CI=1.40


[209-224]:
1qwra_PU_209-224
CI=0.00


[225-252]:
1qwra_PU_225-252
CI=3.12


[253-268]:
1qwra_PU_253-268
CI=0.00


[269-290]:
1qwra_PU_269-290
CI=2.58


[291-312 ]:
1qwra_PU_291-312
CI=0.00