Copper-transporting ATPase 2 (ATP7B)

The protein contains 1465 amino acids for an estimated molecular weight of 157263 Da.

 

Copper ion transmembrane transporter involved in the export of copper out of the cells. It is involved in copper homeostasis in the liver, where it ensures the efflux of copper from hepatocytes into the bile in response to copper overload. (updated: Oct. 10, 2018)

Protein identification was indicated in the following studies:

  1. Bryk and co-workers. (2017) Quantitative Analysis of Human Red Blood Cell Proteome. J Proteome Res. 16(8), 2752-2761.
  2. D'Alessandro and co-workers. (2017) Red blood cell proteomics update: is there more to discover? Blood Transfus. 15(2), 182-187.

Methods

The following articles were analysed to gather the proteome content of erythrocytes.

The gene or protein list provided in the studies were processed using the ID mapping API of Uniprot in September 2018. The number of proteins identified and mapped without ambiguity in these studies is indicated below.
Only Swiss-Prot entries (reviewed) were considered for protein evidence assignation.

PublicationIdentification 1Uniprot mapping 2Not mapped /
Obsolete
TrEMBLSwiss-Prot
Goodman (2013)2289 (gene list)227853205992269
Lange (2014)123412347281224
Hegedus (2015)2638262202352387
Wilson (2016)165815281702911068
d'Alessandro (2017)18261817201815
Bryk (2017)20902060101081942
Chu (2018)18531804553621387

1 as available in the article and/or in supplementary material
2 uniprot mapping returns all protein isoforms as one entry

The compilation of older studies can be retrieved from the Red Blood Cell Collection database.

The data and differentiation stages presented below come from the proteomic study and analysis performed by our partners of the GReX consortium, more details are available in their published work.

No sequence conservation computed yet.

This protein is predicted to be membranous by TOPCONS.


Interpro domains
Total structural coverage: 0%
Model score: 0
No model available.

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VariantDescription
dbSNP:rs587783319
WD
WD
WD
dbSNP:rs1429553821
WD
WD
WD
empty
WD
WD; unknown pathological significance
empty
WD
dbSNP:rs770903362
No effect on copper transport activity
dbSNP:rs587783298
Decreased copper transport rates
empty
WD
WD
WD; unknown pathological significance; no effect on copper transport activity; does not affect interaction with COMMD1
WD
WD
WD
WD; unknown pathological significance
dbSNP:rs778475094
WD
WD
WD
WD; unknown pathological significance; increased interaction with COMMD1
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD; unknown pathological significance; no effect on protein abundance; altered copper-induced relocalization; no effect on copper transport activity
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
empty
WD
WD; unknown pathological significance
WD; unknown pathological significance
WD; unknown pathological significance
WD; unknown pathological significance
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
empty
WD
WD
Decreased copper transport activity
WD
WD
WD
WD; unknown pathological significance
WD
empty
WD
WD
WD
WD
Individuals heterozygous for Wilson disease mutations on the R-875 bac
WD; requires 2 nucleotide substitutions
WD
WD
WD
WD
WD; unknown pathological significance
WD
WD
WD
WD
WD
WD
dbSNP:rs534960245
WD
WD
WD
WD
WD
WD
WD
WD
dbSNP:rs732774
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD; unknown pathological significance
WD
WD; unknown pathological significance
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD; unknown pathological significance
WD
WD
WD
WD
WD
WD
WD; unknown pathological significance
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD; unknown pathological significance
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
dbSNP:rs759109027
WD
WD; unknown pathological significance
WD; unknown pathological significance
No effect on copper transport activity
WD
dbSNP:rs587783313
WD
WD
WD
WD; unknown pathological significance
WD
WD
WD
WD
WD
WD
WD
WD
WD; yeast complementation assays show that the variant fully rescue iron-uptake deficiency of yeast mutant ccc2
WD
WD
WD
WD
WD
WD; unknown pathological significance; no effect on copper transport activity
WD
WD
WD; unknown pathological significance
dbSNP:rs7334118
WD
WD
WD
WD
WD
WD; decreased copper transport activity; loss of ATPase activity
WD
WD; yeast complementation assays show that the variant fully rescue iron-uptake deficiency of yeast mutant ccc2
WD
WD
WD
dbSNP:rs1277243795
dbSNP:rs587783316
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD; decreased copper transport activity; loss of ATPase activity
WD
WD; yeast complementation assays show that the variant does not rescue iron-uptake deficiency of yeast mutant ccc2
WD
WD
WD
WD
WD; unknown pathological significance
WD
WD
WD
WD
WD
WD
WD
WD
dbSNP:rs148399850
WD
WD; unknown pathological significance
WD
WD
WD
WD
WD
WD
WD
WD; unknown pathological significance
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
WD
dbSNP:rs587783320
WD; unknown pathological significance
WD
WD

The reference OMIM entry for this protein is 277900

Wilson disease
Wnd; wd
Hepatolenticular degeneration

A number sign (#) is used with this entry because Wilson disease is caused by homozygous or compound heterozygous mutation in the ATP7B gene (606882) on chromosome 13q14.

DESCRIPTION

Wilson disease is an autosomal recessive disorder characterized by dramatic build-up of intracellular hepatic copper with subsequent hepatic and neurologic abnormalities. De Bie et al. (2007) provided a detailed review of the molecular pathogenesis of Wilson disease.

CLINICAL FEATURES

In Wilson disease, the basal ganglia and liver undergo changes that express themselves in neurologic manifestations and signs of cirrhosis, respectively. A disturbance in copper metabolism is somehow involved in the mechanism. Low ceruloplasmin (117700) is found in the serum. Shokeir and Shreffler (1969) advanced the hypothesis that ceruloplasmin functions in enzymatic transfer of copper to copper-containing enzymes such as cytochrome oxidase. Supporting the hypothesis was the finding of markedly reduced levels of activity of cytochrome oxidase in Wilson disease and moderate reductions in heterozygotes. The Kayser-Fleischer ring is a deep copper-colored ring at the periphery of the cornea which is frequently found in Wilson disease and is thought to represent copper deposits. Bearn and McKusick (1958) and Whelton and Pope (1968) described azure lunulae of the fingernails in patients with Wilson disease. These are presumably of the same significance as the Kayser-Fleischer ring and possibly arise by the same mechanism. Hypercalciuria and nephrocalcinosis are not uncommon in patients with Wilson disease. Hypercalciuria associated with this disorder was first reported by Litin et al. (1959). Wiebers et al. (1979) observed renal stones in 7 of 54 patients with Wilson disease. Penicillamine therapy was accompanied by a decrease in urinary calcium excretion to normal values in 3 patients, but hypercalciuria persisted in 3. Azizi et al. (1989) described hypercalciuria and nephrolithiasis as presenting signs in Wilson disease and postulated tubular defect in calcium reabsorption. Hoppe et al. (1993) described a 17-year-old male with a 6-year history of hypercalciuria, nephrocalcinosis, and nephrolithiasis, in whom Wilson disease was finally diagnosed. Bearn (1960) suggested that Jewish WND patients from eastern Europe are different from other groups of patients in that the age at onset is later, the disease is generally milder, and the serum copper and serum ceruloplasmin levels are 'particularly liable to be of normal concentration.' Bonne-Tamir et al. (1990) provided a full analysis of Wilson disease in Israel. From a study of 28 Canadian families, Cox et al. (1972) suggested that there are at least 3 forms of Wilson disease. In a rare 'atypical form,' the heterozygotes show about 50% of the normal level of ceruloplasmin. This gene may have been of German-Mennonite derivation. In the 2 typical forms heterozygotes have normal ceruloplasmin levels, although they can be identified by decreased reappearance of radioactive copper into serum and ceruloplasmin. The authors referred to the 2 'typical forms' as the Slavic and the juvenile type. The Slavic type has a late age of onset and is predominantly a neurologic disease. The juvenile type, which occurs in western Europeans and several other ethnic groups, has onset before age 16 years and is frequently a hepatic disease. Czaja et al. (1987) demonstrated reduced ceruloplasmin gene transcription in 4 patients with Wi ... More on the omim web site

Subscribe to this protein entry history

Nov. 17, 2018: Protein entry updated
Automatic update: OMIM entry 277900 was added.

Oct. 19, 2018: Additional information
Initial protein addition to the database. This entry was referenced in Bryk and co-workers. (2017).