Vitamin D-binding protein (GC)

The protein contains 474 amino acids for an estimated molecular weight of 52918 Da.

 

Involved in vitamin D transport and storage, scavenging of extracellular G-actin, enhancement of the chemotactic activity of C5 alpha for neutrophils in inflammation and macrophage activation. (updated: Oct. 10, 2018)

Protein identification was indicated in the following studies:

  1. D'Alessandro and co-workers. (2017) Red blood cell proteomics update: is there more to discover? Blood Transfus. 15(2), 182-187.

Methods

The following articles were analysed to gather the proteome content of erythrocytes.

The gene or protein list provided in the studies were processed using the ID mapping API of Uniprot in September 2018. The number of proteins identified and mapped without ambiguity in these studies is indicated below.
Only Swiss-Prot entries (reviewed) were considered for protein evidence assignation.

PublicationIdentification 1Uniprot mapping 2Not mapped /
Obsolete
TrEMBLSwiss-Prot
Goodman (2013)2289 (gene list)227853205992269
Lange (2014)123412347281224
Hegedus (2015)2638262202352387
Wilson (2016)165815281702911068
d'Alessandro (2017)18261817201815
Bryk (2017)20902060101081942
Chu (2018)18531804553621387

1 as available in the article and/or in supplementary material
2 uniprot mapping returns all protein isoforms as one entry

The compilation of older studies can be retrieved from the Red Blood Cell Collection database.

The data and differentiation stages presented below come from the proteomic study and analysis performed by our partners of the GReX consortium, more details are available in their published work.

No sequence conservation computed yet.

Interpro domains
Total structural coverage: 97%
Model score: 100
No model available.

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VariantDescription
allele GC*1S
allele GC*2, allele GC*2A9
allele GC*2A9; requires 2 nucleotide substitutions
allele GC*1F, allele GC*2 and allele GC*1S

The reference OMIM entry for this protein is 139200

Group-specific component; gc
Vitamin d-binding protein; dbp; vdbp
Vitamin d-binding alpha-globulin; vdbg

DESCRIPTION

Human group-specific component (GC) is the major vitamin D-binding protein in plasma (summary by Yang et al., 1985).

CLONING

By immunoelectrophoresis, Hirschfeld (1959) discovered polymorphism of the serum alpha-2-globulin called Gc for group-specific component. Gc1-1, Gc2-2, and Gc2-1 phenotypes can be distinguished also by starch or agar electrophoresis (Bearn et al., 1964). In the same year that Gc proteins were reported, another human plasma protein, vitamin D-binding alpha-globulin (VDBG), was described (Thomas et al., 1959). Daiger et al. (1975) demonstrated that Gc and VDBG are identical. Svasti et al. (1979) showed that Gc has a single polypeptide chain with a molecular mass of 52,000 Da. They found that the difference between Gc-1(fast), or GC1f, and Gc-1(slow), or GC1s, is posttranslational, involving carbohydrate differences; the difference between Gc-1 and Gc-2 is related to primary structure. Yang et al. (1985) cloned human GC cDNA from an adult liver library. The deduced 458-amino acid protein shares 25% and 19% sequence identity with albumin (ALB; 103600) and alpha-fetoprotein (AFP), respectively. The pattern of disulfide bridges that contribute to the double loops forming the 3 domains in each protein is highly conserved. Yang et al. (1990) found that the deduced amino acid sequence of mouse Gc is 78% identical to human Gc and 91% identical to rat Gc.

MAPPING

Weitkamp et al. (1966) concluded that the albumin locus (ALB; 103600) is closely linked to Gc. Mikkelsen et al. (1977) presented studies they interpreted as indicating that the Gc locus is on the long arm of chromosome 4. In a mentally retarded girl a segment of that chromosome (4q11-q13) was missing. The patient was Gc2-2, with an abnormally low Gc concentration. Her mother was also Gc2-2 but the father was Gc1-1. No other member of the family showed a decreased Gc level. Previously, the same group (Henningsen et al., 1969) thought that the girl had a reciprocal translocation between the long arm of a group B chromosome and one arm of a group F chromosome. Abnormal segregation of the Gc system was observed in the proposita suggesting either a silent allele in the father or a gene dosage effect (Henningsen et al., 1969). Yamamoto et al. (1989) described a second patient who was possibly hemizygous for the Gc locus and who also had an interstitial deletion of 4q, specifically q12-q21.1. The Gc phenotypes of the propositus, father, and mother were 1F, 1S and 1F, respectively. The serum concentrations of Gc protein in the patient and his father were only about half of those of his mother and control individuals. Thus, it is possible that the father was heterozygous for a silent allele which was transmitted to the son with the de novo deletion. Linkage of Gc and MNSs at recombination frequencies of less than 25% in males and 30% in females was excluded by Weitkamp (1978). For MN versus Gc, Falk et al. (1979) found a male lod score of 3.75 at a recombination fraction of 0.30, and a female lod score of 0.34 at a recombination fraction of 0.42. Location of MN on chromosome 4q (where Gc has been tentatively placed) is consistent with the findings of German et al. (1969) on a family in which a child with a reciprocal translocation between 2q and 4q was hemizygous at the MN locus. For the linkage of DGI (125490) and GC, Ball et al. (1982) found a maximum lod score of 7.9 at a male recombination fraction of 0.05 and a female recombi ... More on the omim web site

Subscribe to this protein entry history

July 1, 2020: Protein entry updated
Automatic update: OMIM entry 139200 was added.

Oct. 19, 2018: Additional information
Initial protein addition to the database. This entry was referenced in Bryk and co-workers. (2017).