Intraflagellar transport protein 140 homolog (IFT140)

The protein contains 1462 amino acids for an estimated molecular weight of 165193 Da.

 

Component of the IFT complex A (IFT-A), a complex required for retrograde ciliary transport and entry into cilia of G protein-coupled receptors (GPCRs) (PubMed:20889716, PubMed:22503633). Plays a pivotal role in proper development and function of ciliated cells through its role in ciliogenesis and/or cilium maintenance (PubMed:22503633). Required for the development and maintenance of the outer segments of rod and cone photoreceptor cells. Plays a role in maintenance and the delivery of opsin to the outer segment of photoreceptor cells (By similarity). (updated: May 8, 2019)

Protein identification was indicated in the following studies:

  1. D'Alessandro and co-workers. (2017) Red blood cell proteomics update: is there more to discover? Blood Transfus. 15(2), 182-187.

Methods

The following articles were analysed to gather the proteome content of erythrocytes.

The gene or protein list provided in the studies were processed using the ID mapping API of Uniprot in September 2018. The number of proteins identified and mapped without ambiguity in these studies is indicated below.
Only Swiss-Prot entries (reviewed) were considered for protein evidence assignation.

PublicationIdentification 1Uniprot mapping 2Not mapped /
Obsolete
TrEMBLSwiss-Prot
Goodman (2013)2289 (gene list)227853205992269
Lange (2014)123412347281224
Hegedus (2015)2638262202352387
Wilson (2016)165815281702911068
d'Alessandro (2017)18261817201815
Bryk (2017)20902060101081942
Chu (2018)18531804553621387

1 as available in the article and/or in supplementary material
2 uniprot mapping returns all protein isoforms as one entry

The compilation of older studies can be retrieved from the Red Blood Cell Collection database.

The data and differentiation stages presented below come from the proteomic study and analysis performed by our partners of the GReX consortium, more details are available in their published work.

No sequence conservation computed yet.

Interpro domains
Total structural coverage: 0%
Model score: 0
No model available.

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VariantDescription
RP80
dbSNP:rs371077545
SRTD9
dbSNP:rs148462329
dbSNP:rs35588860
SRTD9
SRTD9
dbSNP:rs539181813
SRTD9; disease phenotype consistent with Mainzer-Saldino syndrome
dbSNP:rs4786350
dbSNP:rs35404373
SRTD9
SRTD9
SRTD9
RP80
RP80
RP80
dbSNP:rs34762152
RP80
RP80
dbSNP:rs8060532
dbSNP:rs778311141
RP80
dbSNP:rs150903791
SRTD9
dbSNP:rs8050974
SRTD9
dbSNP:rs11648609
RP80
SRTD9 and RP80
dbSNP:rs34900355
No effect on localization to the basal body
dbSNP:rs144938800
RP80
RP80
RP80
RP80
dbSNP:rs2235638
RP80
dbSNP:rs146666187
SRTD9
RP80

No binding partner found

The reference OMIM entry for this protein is 266920

Short-rib thoracic dysplasia 9 with or without polydactyly; srtd9
Mainzer-saldino syndrome; mzsds
Conorenal syndrome
Renal dysplasia, retinal pigmentary dystrophy, cerebellar ataxia, and skeletal dysplasia

A number sign (#) is used with this entry because short-rib thoracic dysplasia-9 with or without polydactyly (SRTD9) is caused by homozygous or compound heterozygous mutation in the IFT140 gene (614620) on chromosome 16p13.

DESCRIPTION

Short-rib thoracic dysplasia (SRTD) with or without polydactyly refers to a group of autosomal recessive skeletal ciliopathies that are characterized by a constricted thoracic cage, short ribs, shortened tubular bones, and a 'trident' appearance of the acetabular roof. SRTD encompasses Ellis-van Creveld syndrome (EVC) and the disorders previously designated as Jeune syndrome or asphyxiating thoracic dystrophy (ATD), short rib-polydactyly syndrome (SRPS), and Mainzer-Saldino syndrome (MZSDS). Polydactyly is variably present, and there is phenotypic overlap in the various forms of SRTDs, which differ by visceral malformation and metaphyseal appearance. Nonskeletal involvement can include cleft lip/palate as well as anomalies of major organs such as the brain, eye, heart, kidneys, liver, pancreas, intestines, and genitalia. Some forms of SRTD are lethal in the neonatal period due to respiratory insufficiency secondary to a severely restricted thoracic cage, whereas others are compatible with life (summary by Huber and Cormier-Daire, 2012 and Schmidts et al., 2013). There is phenotypic overlap with the cranioectodermal dysplasias (Sensenbrenner syndrome; see CED1, 218330). For a discussion of genetic heterogeneity of short-rib thoracic dysplasia, see SRTD1 (208500).

CLINICAL FEATURES

The association of renal dysplasia, retinal pigmentary dystrophy, cerebellar ataxia, and skeletal dysplasia was reported in 2 patients by Mainzer et al. (1970) and in 1 patient by Popovic-Rolovic et al. (1976). Robins et al. (1976) observed similar skeletal changes and hepatic fibrosis with renal dysplasia. Giedion (1979) summarized the cases of 8 patients under the age of 11 years with chronic renal failure and phalangeal cone-shaped epiphyses of the hands, coining the term 'conorenal syndrome.' Half of Giedion's patients had retinitis pigmentosa and 25% had ataxia. Giedion (1979) reported nephronophthisis in his patients; however, neither biopsy material nor clinical course was available to confirm that diagnosis. Mendley et al. (1995) extended the delineation of the conorenal syndrome to include renal histopathologic and clinical features of a primarily glomerular disorder. They reported 2 sibs, aged 7 and 19 years, with cone-shaped phalangeal epiphyses and renal disease that was different in nature and rate of progression from cases previously described: the clinical features of nephronophthisis (medullary cystic kidney disease) were absent and, while the younger sib had reached end-stage renal disease, the older sib's renal function was only modestly impaired and had remained nearly unchanged for several years. The brother and sister were of Mexican extraction. The 7-year-old sister had prominent cone-shaped epiphyses in the distal phalanges and cone-shaped epiphyses in the middle phalanges of the index and fifth fingers. The 19-year-old brother had very short distal phalanges, some of which appeared flexed, and the middle phalanges of the second and fifth digits were markedly short. Both parents were phenotypically normal; hand radiographs in the mother were normal without signs of cone-shaped epiphyses. Percutaneous renal biopsy showed global scarring and acellularity of many glomeruli in both sibs. B ... More on the omim web site

Subscribe to this protein entry history

June 30, 2020: Protein entry updated
Automatic update: OMIM entry 266920 was added.

May 11, 2019: Protein entry updated
Automatic update: Entry updated from uniprot information.

Oct. 19, 2018: Additional information
Initial protein addition to the database. This entry was referenced in Bryk and co-workers. (2017).